View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_32 (Length: 397)
Name: NF6021_high_32
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 42348153 - 42347808
Alignment:
| Q |
19 |
acaagatgcatatctttgataaggataaccgtcctgagatttcacttaaccctatagtaaccgcagaggatccaatcccatattcagtagatttgggcga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
42348153 |
acaagatgcatatctttgataaggataaccgtcctgagatttcgcttaaccctatagtaaccgcagaggatccaatcctatattaagtagatttgggcga |
42348054 |
T |
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| Q |
119 |
ttttacatcgtataaacccaataagaaactacnnnnnnnnnnnnaactgtggcaagatatttcacatatatcatattttttcgtgg-----cgagatatc |
213 |
Q |
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|||||||| |||||||||| | | || |||| ||||||||||||||||||||||||||| ||| | || ||||||||| |
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| T |
42348053 |
ttttacatgctataaacccacccaata--tatatatatgttataaactctggcaagatatttcacatatatcatatatttcagaggtatttcgagatatc |
42347956 |
T |
|
| Q |
214 |
tgatttgttannnnnnngttgtgttttaattcatttcttcttcctagcacgtgacatcatagcacacgttttgaagacccacccaatttaactttccaca |
313 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42347955 |
tgatttgttatttttttgctgtgttttaattcatttcttcttcctagcacgtgacatcatagcacacgttttgaagacccacccaatttaactttccaca |
42347856 |
T |
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| Q |
314 |
cagccaaattttcccttcgtctgaggagagagccgcttcttcttcttc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42347855 |
cagccaaattttcccttcgtctgaggagagagccgcttcttcttcttc |
42347808 |
T |
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