View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_36 (Length: 370)

Name: NF6021_high_36
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_36
NF6021_high_36
[»] chr1 (4 HSPs)
chr1 (13-286)||(41149892-41150165)
chr1 (73-360)||(45270045-45270332)
chr1 (142-306)||(14863135-14863299)
chr1 (81-121)||(30712936-30712976)
[»] chr5 (6 HSPs)
chr5 (73-360)||(25671756-25672043)
chr5 (85-306)||(4298370-4298591)
chr5 (85-306)||(41589955-41590176)
chr5 (273-349)||(21076939-21077015)
chr5 (73-119)||(35837254-35837300)
chr5 (217-301)||(26413180-26413264)
[»] chr3 (10 HSPs)
chr3 (81-360)||(48929531-48929810)
chr3 (85-349)||(6824636-6824900)
chr3 (85-308)||(16672946-16673169)
chr3 (187-349)||(9109390-9109555)
chr3 (189-295)||(19548649-19548755)
chr3 (81-349)||(52251181-52251449)
chr3 (73-119)||(6985947-6985993)
chr3 (73-119)||(8129996-8130042)
chr3 (217-295)||(17700105-17700183)
chr3 (81-119)||(19548541-19548579)
[»] chr2 (4 HSPs)
chr2 (73-358)||(43724191-43724474)
chr2 (217-349)||(10688378-10688510)
chr2 (73-119)||(6727826-6727872)
chr2 (73-119)||(13415728-13415774)
[»] chr6 (3 HSPs)
chr6 (73-239)||(34434189-34434355)
chr6 (73-121)||(15602367-15602415)
chr6 (189-294)||(6995145-6995250)
[»] chr8 (11 HSPs)
chr8 (85-306)||(195188-195408)
chr8 (85-306)||(310025-310245)
chr8 (85-349)||(36492196-36492460)
chr8 (151-349)||(14023230-14023428)
chr8 (213-349)||(3913250-3913386)
chr8 (81-295)||(35029091-35029305)
chr8 (81-119)||(5802172-5802210)
chr8 (73-119)||(12331901-12331947)
chr8 (81-119)||(30426484-30426522)
chr8 (217-295)||(38140563-38140641)
chr8 (219-295)||(30426308-30426384)
[»] scaffold0070 (1 HSPs)
scaffold0070 (85-349)||(26464-26728)
[»] chr7 (2 HSPs)
chr7 (217-349)||(25019509-25019641)
chr7 (81-121)||(6343697-6343737)
[»] scaffold0750 (1 HSPs)
scaffold0750 (73-119)||(6096-6142)
[»] scaffold0124 (1 HSPs)
scaffold0124 (73-119)||(22458-22504)
[»] scaffold0061 (1 HSPs)
scaffold0061 (219-301)||(64834-64916)
[»] scaffold0017 (1 HSPs)
scaffold0017 (219-301)||(133716-133798)
[»] chr4 (5 HSPs)
chr4 (73-119)||(22877514-22877560)
chr4 (217-295)||(30821930-30822008)
chr4 (73-119)||(40688112-40688158)
chr4 (219-301)||(48117231-48117313)
chr4 (68-121)||(54684653-54684706)
[»] scaffold0190 (1 HSPs)
scaffold0190 (217-253)||(3794-3830)
[»] scaffold0024 (1 HSPs)
scaffold0024 (68-112)||(87246-87290)
[»] scaffold0003 (1 HSPs)
scaffold0003 (217-349)||(366713-366845)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 41150165 - 41149892
Alignment:
Q  13 aatattaaaaccgtcaattaaactagaccttggagaaccatattttatctttcgagattcggcacaaccatgttccgcttaaggtctctatttttgcttg 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41150165 aatattaaaaccgtcaattaaactagactttggagaaccatattttatctttcgagatttggcacaaccatgttccgcttaaggtctctatttttgcttg 41150066  T
Q  113 gaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgcgtgctgtttgttagggtgcgacgctttg 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41150065 gaggttgctgaagaaccgtttacctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgcgggctgtttgttagggtgcgacgctttg 41149966  T
Q  213 gagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttgg 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  41149965 gagtcttctcagtatttattcatctcttgtgattattatggttcattgtgatctcggattcggtcttggcttgg 41149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 73 - 360
Target Start/End: Complemental strand, 45270332 - 45270045
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttcc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45270332 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatttggtgcatcgtggtatccttcc 45270233  T
Q  173 agctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggtt 272  Q
    ||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  45270232 agccactgttgcgggctatttgttagggtgcgacgctttgaagtcttctcagcatttattcatctcttgtgattattatggttgtttgtggtctcgggtt 45270133  T
Q  273 cggtcttggcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcaggaagggtgcggg 360  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  45270132 cggtcttggcttggtgtctcaggtccagatcccttattggtttcagagcacttctttcagtttactcattcagcaggaggggtgcggg 45270045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 14863135 - 14863299
Alignment:
Q  142 ggcaaaatctggtgcatcgtggtatccttccagctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttg 241  Q
    ||||||||||||| |||||||| |||||| ||| |||||||||  | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||    
T  14863135 ggcaaaatctggttcatcgtggaatcctttcagatactgttgctggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttg 14863234  T
Q  242 tgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccct 306  Q
    ||||| ||||||||||||||||||||  |||||| | ||||||||||| || || || |||||||    
T  14863235 tgatttttatggttcattgtggtctcttgttcgggcgtggcttggtgtttctggacctgatccct 14863299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 30712936 - 30712976
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttgct 121  Q
    ||||||||||||||||| |||||||| |||||| |||||||    
T  30712936 catgttccgcttaaggtgtctattttcgcttggcggttgct 30712976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 73 - 360
Target Start/End: Complemental strand, 25672043 - 25671756
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttcc 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25672043 ggcacaaccatgttacgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcattgtggtatccttcc 25671944  T
Q  173 agctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggtt 272  Q
    ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  25671943 agccactgctgcgggctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatcttttgtgattattatggttctttgtggtctcgggtt 25671844  T
Q  273 cggtcttggcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcaggaagggtgcggg 360  Q
    | ||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||| || |||||||||    
T  25671843 cagtcttagcttggtgtctcaggtccggatcccttattggtttcagagcacttctttcagtttactcattcagcatgaggggtgcggg 25671756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 85 - 306
Target Start/End: Original strand, 4298370 - 4298591
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||||||||||| || ||  ||| || |||||   | ||||||||||||| |||||||| |||||| ||| ||||| |||    
T  4298370 ttccgcttaaggtctcaatttttgcttggaggctgttgcggaatcgcttgccgacacggcaaaatctggttcatcgtggaatcctttcagatactgctgc 4298469  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  4298470 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcatggctt 4298569  T
Q  285 ggtgtctcaggtccagatccct 306  Q
    |||||||| || || |||||||    
T  4298570 ggtgtctctggacctgatccct 4298591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 85 - 306
Target Start/End: Complemental strand, 41590176 - 41589955
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||||||||||| || ||  ||| ||||||||   | ||||||||||||| |||||||| |||||| ||| ||||| |||    
T  41590176 ttccgcttaaggtctcgatttttgcttggaggctgttgcggaatcgtttgccgacacggcaaaatctggttcatcgtggaatcctttcagatactgctgc 41590077  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||   ||||||    
T  41590076 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggtgtggctt 41589977  T
Q  285 ggtgtctcaggtccagatccct 306  Q
    |||||||| || || |||||||    
T  41589976 ggtgtctctggacctgatccct 41589955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 21077015 - 21076939
Alignment:
Q  273 cggtcttggcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    ||||||||||||||||||||||||||| | || |||   |||||| | ||||||||||| |||||||||| ||||||    
T  21077015 cggtcttggcttggtgtctcaggtccaaacccttttactgtttcagatcacttctttcagtttactcatttagcagg 21076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 35837300 - 35837254
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||    
T  35837300 ggcacaaacaggttccgcttaaggtgtctatttttgcttggaggttg 35837254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 26413180 - 26413264
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccaga 301  Q
    ||||||| |||||||||||  | ||||||| |||||| || ||||||  |  ||| ||||||||||||||||||||||| |||||    
T  26413180 cttctcaacatttattcattacgtgtgatttttatggctctttgtggcataaggtgcggtcttggcttggtgtctcaggaccaga 26413264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 81 - 360
Target Start/End: Complemental strand, 48929810 - 48929531
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactg 180  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||| ||||    
T  48929810 catgttccgcttaaggtctttatttttgcttggaggttgctgaagaactgtttgcctttaaggcaaaatctagtgcattatggtatccttccagccactg 48929711  T
Q  181 ttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttg 280  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  48929710 ttgcgggctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctattgtgattattatggttctttgtggtctcgggttcggtcttg 48929611  T
Q  281 gcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcaggaagggtgcggg 360  Q
    |||||||| |||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  48929610 gcttggtgcctcaggtccagaccccttattggtttcagagcacttctttcagtttactcattcagcaggaagggtgcggg 48929531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 6824900 - 6824636
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| |||||||||| |||| || ||  ||| || |||||   | ||||||||||||| |||||||| |||||| ||| ||||| |||    
T  6824900 ttccgcttaaggtctcaatttttgcttagaggctgttgcggaatcgcttgccgacacggcaaaatctggttcatcgtggaatcctttcagatactgctgc 6824801  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  6824800 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatatcttgtgatttttatggttcattgtggtctcttgttcgggcgtggctt 6824701  T
Q  285 ggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    ||||||||  | || ||||| | ||| |||||  | || ||  |||| |||||||||||||||||    
T  6824700 ggtgtctctcgacctgatccatgttttgtttccgatcattttcttcagtttactcattcagcagg 6824636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 85 - 308
Target Start/End: Original strand, 16672946 - 16673169
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||||||||||| || ||| ||| ||  ||||   | ||||||||||||| |||||||| |||||| ||| |||   |||    
T  16672946 ttccgcttaaggtctcaatttttgcttggaggctgttgaggaatcgcatgccgacacggcaaaatctggttcatcgtggaatcctttcagatacccctgc 16673045  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||| ||| ||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  16673046 tggttgtttgttagggtgcggagctgtggagacttgtcaacatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcgtggctt 16673145  T
Q  285 ggtgtctcaggtccagatcccttt 308  Q
    ||||| || || || |||||||||    
T  16673146 ggtgtttctggacccgatcccttt 16673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 349
Target Start/End: Original strand, 9109390 - 9109555
Alignment:
Q  187 gctgtttgttagggt---gcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggct 283  Q
    |||||||||||||||   |||  ||| ||||| ||||||||||||||||||| |||||||||| |||||| || |||||||||| ||||||| |||||||    
T  9109390 gctgtttgttagggtactgcggagctatggagacttctcagcatttattcatttcttgtgatttttatggatcgttgtggtctcaggttcgggcttggct 9109489  T
Q  284 tggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    |||||| ||||| || || |||||| | |||||| | || ||  |||| |||||||||| ||||||    
T  9109490 tggtgtttcaggacccgacccctttattgtttcagatcattttcttcagtttactcattaagcagg 9109555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 19548649 - 19548755
Alignment:
Q  189 tgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtg 288  Q
    |||||||||||||||| |   || ||| |||||||||||||||| || ||||||| || ||||||  | ||||||| || ||| |||||||| |||||||    
T  19548649 tgtttgttagggtgcggccaattcgagacttctcagcatttatttatttcttgtggtttttatggcactttgtggtttcaggtgcggtcttgacttggtg 19548748  T
Q  289 tctcagg 295  Q
    |||||||    
T  19548749 tctcagg 19548755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 349
Target Start/End: Original strand, 52251181 - 52251449
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactg 180  Q
    |||||||| |||||||| || |||||||||||||||||| | ||||| || ||||||  ||||  ||||||| ||| ||| ||| | |||   | | | |    
T  52251181 catgttccacttaaggtttccatttttgcttggaggttggtaaagaatcggttgcctacaaggtcaaatctgctgcgtcgcggtgttcttttggttgcag 52251280  T
Q  181 ttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttg 280  Q
     |||   ||||||||||||||||| |    | ||| | |||||||| ||||| || ||||||||||  |||||  | ||||||| |  ||| ||||||||    
T  52251281 atgcagactgtttgttagggtgcggccacgtcgagacatctcagcacttatttatttcttgtgatttctatggcactttgtggtttaaggtgcggtcttg 52251380  T
Q  281 gcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    ||||||||||||||| ||| | ||| ||   |||||| | || |||||||| ||  |||||||||||||    
T  52251381 gcttggtgtctcaggcccataccccattcatgtttcagatcatttctttcagttctctcattcagcagg 52251449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 6985993 - 6985947
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| || ||||| |||||||||||||||||||||    
T  6985993 ggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttg 6985947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 8130042 - 8129996
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| || ||||| |||||||||||||||||||||    
T  8130042 ggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttg 8129996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 17700183 - 17700105
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcagg 295  Q
    |||||||||||||||| | |||||||  || ||||||  | ||||||  || ||| |||||||||||||||||||||||    
T  17700183 cttctcagcatttatttacctcttgtagtttttatggcactttgtggagtcaggtgcggtcttggcttggtgtctcagg 17700105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 19548541 - 19548579
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  19548541 catgttccacttaaggtctcaatttttgcttggaggttg 19548579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 73 - 358
Target Start/End: Original strand, 43724191 - 43724474
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttcc 172  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  43724191 ggcacaatcatgttccgcttaaggtctcaatttttgcttggaggttgatgaagaatcgtttgcctttaaggcaaaatctggtgcatcgtggtatcctttg 43724290  T
Q  173 agctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggtt 272  Q
    |   || | |||  | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||    
T  43724291 ac--accgctgctggttgtttgttagggtgcgacgctttagagtcttctcagcatttattcatttcttgtgattattatggcacgttgtggtctcgggtt 43724388  T
Q  273 cggtcttggcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcaggaagggtgcg 358  Q
    | |||||| |||||| ||||||||||||||||| || | |||||| |||||||| |||| |||||||||||||||||  |||||||    
T  43724389 cagtcttgacttggtatctcaggtccagatcccattattgtttcagagcacttccttcagtttactcattcagcaggtggggtgcg 43724474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 10688510 - 10688378
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccctttttggtttc 316  Q
    |||||||||||||||| || ||||||| || |||||| || ||||||| |  ||| ||||||||||||||||||||||| ||||| ||| || | || ||    
T  10688510 cttctcagcatttatttatttcttgtggtttttatggctctttgtggtttaaggtgcggtcttggcttggtgtctcaggcccagaccccattgttgtctc 10688411  T
Q  317 aaagcacttctttcaatttactcattcagcagg 349  Q
    | | |||||| |||| ||  |||||||||||||    
T  10688410 agatcacttccttcagttctctcattcagcagg 10688378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 6727826 - 6727872
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| || ||||| |||||||| |||||||||||||||||||||    
T  6727826 ggcacaaacaggttccccttaaggtgtctatttttgcttggaggttg 6727872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 13415774 - 13415728
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| |||||||| ||||||||| |||||||||||    
T  13415774 ggcacaaacatgttccccttaaggtgtctattttttcttggaggttg 13415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 34434355 - 34434189
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttcc 172  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||    
T  34434355 ggcataaccatgttccgcttaaagtctctatttttgcttggaggttgctgaagaactgtttgcctttaaggcaaaatttggtgcaccatggtatccttcc 34434256  T
Q  173 agctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctct 239  Q
    || ||||| ||||  ||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  34434255 agttactgctgcggcctgtttgttagggtgcgtcactttggagtcttctcaacatttattcatctct 34434189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 15602415 - 15602367
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgct 121  Q
    |||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  15602415 ggcataaccatgttccgattaaggtgtctatttttgcttggcggttgct 15602367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 6995145 - 6995250
Alignment:
Q  189 tgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtg 288  Q
    |||||||||||||||| | |  | ||| |||||||||||||||| || |||||||||| || |||  | ||||||| |  | | |||| |||||||||||    
T  6995145 tgtttgttagggtgcggcccaatcgagacttctcagcatttatttatttcttgtgatttttgtggcactttgtggtttaagatgcggtattggcttggtg 6995244  T
Q  289 tctcag 294  Q
    ||||||    
T  6995245 tctcag 6995250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 306
Target Start/End: Complemental strand, 195408 - 195188
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||||||||||| || ||  ||| ||||||||   | ||||||||||||| |||||||| |||||| ||| |||||||||    
T  195408 ttccgcttaaggtctcgatttttgcttggaggctgttgcggaatcgtttgccgacacggcaaaatctggttcatcgtggaatcctttcag-tactgttgc 195310  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  195309 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcgtggctt 195210  T
Q  285 ggtgtctcaggtccagatccct 306  Q
    |||||||| || || |||||||    
T  195209 ggtgtctctggacctgatccct 195188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 306
Target Start/End: Complemental strand, 310245 - 310025
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||||||||||| || ||  ||| ||||||||   | ||||||||||||| |||||||| |||||| ||| |||||||||    
T  310245 ttccgcttaaggtctcgatttttgcttggaggctgttgcggaatcgtttgccgacacggcaaaatctggttcatcgtggaatcctttcag-tactgttgc 310147  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  310146 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcgtggctt 310047  T
Q  285 ggtgtctcaggtccagatccct 306  Q
    |||||||| || || |||||||    
T  310046 ggtgtctctggacctgatccct 310025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 36492460 - 36492196
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    |||||||||||||||| ||||||| ||||||| || ||  ||| || |||||   | ||||||||||||| |||||||| |||||| ||| ||||| |||    
T  36492460 ttccgcttaaggtctcaatttttgtttggaggctgttgcggaatcgcttgccgacacggcaaaatctggttcatcgtggaatcctttcagatactgctgc 36492361  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| | ||||||    
T  36492360 tggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcgtggctt 36492261  T
Q  285 ggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    |||||||| || || ||||||| | | |||||  | || ||  |||| |||||||||||||||||    
T  36492260 ggtgtctctggacctgatccctgtattgtttccgatcattttcttcagtttactcattcagcagg 36492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 349
Target Start/End: Complemental strand, 14023428 - 14023230
Alignment:
Q  151 tggtgcatcgtggtatccttccagctactgttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattatta 250  Q
    |||| |||||||| |||||| ||| ||| | |||  | ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||| |||    
T  14023428 tggttcatcgtggaatcctttcagataccgctgctggttgtttgttagggtgcggagctgtggagacttctcagcatttattcatttcttgtgattttta 14023329  T
Q  251 tggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    |||||||||||||||||  |||||| | ||||||||||| || || || ||||||||| | |||||  | || ||  |||| |||||||||||| ||||    
T  14023328 tggttcattgtggtctcttgttcgggcgtggcttggtgtttctggacctgatccctttattgtttccgaccattttcttcagtttactcattcaacagg 14023230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 3913250 - 3913386
Alignment:
Q  213 gagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccctttttgg 312  Q
    |||||||||||||||||||||||  ||||||| | |||||| ||  ||| |  |  ||| ||||||||||||||||||||||| ||||| || |||   |    
T  3913250 gagtcttctcagcatttattcattacttgtgacttttatggctctctgtagcataaggtgcggtcttggcttggtgtctcaggaccagacccttttaatg 3913349  T
Q  313 tttcaaagcacttctttcaatttactcattcagcagg 349  Q
    | ||||||||||| | ||| |||||||| ||||||||    
T  3913350 tctcaaagcacttttatcagtttactcaatcagcagg 3913386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 295
Target Start/End: Complemental strand, 35029305 - 35029091
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactg 180  Q
    |||||||| |||||||| ||||||||||||||||||||| | ||||| || ||||||  ||||  ||||||| ||  ||| ||| | |||    || | |    
T  35029305 catgttccacttaaggtttctatttttgcttggaggttggtaaagaatcggttgcctacaaggtcaaatctgctgggtcgcggtgttcttttgcctgcgg 35029206  T
Q  181 ttgcgtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttg 280  Q
     |||| |||||||||||||||||| |  | | ||| | ||||| || ||||| || ||||||||||  |||||  | ||||||| |  ||| ||||||||    
T  35029205 atgcgggctgtttgttagggtgcggccttgtcgagacatctcaacacttatttatttcttgtgatttctatggcactttgtggtttaaggtgcggtcttg 35029106  T
Q  281 gcttggtgtctcagg 295  Q
    |||||||||||||||    
T  35029105 gcttggtgtctcagg 35029091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 5802172 - 5802210
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  5802172 catgttccacttaaggtctcaatttttgcttggaggttg 5802210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 12331947 - 12331901
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| ||||||||||| |||||||||||| |||||    
T  12331947 ggcacaaacatgttccacttaaggtctcaatttttgcttggtggttg 12331901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 30426522 - 30426484
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  30426522 catgttccacttaaggtctcaatttttgcttggaggttg 30426484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 38140563 - 38140641
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcagg 295  Q
    ||||||||||||||||||| |||||||||| |||||| ||   ||||  |  ||| |||||||| ||||||||||||||    
T  38140563 cttctcagcatttattcatttcttgtgatttttatggctctcagtggcataaggtgcggtcttgacttggtgtctcagg 38140641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 30426384 - 30426308
Alignment:
Q  219 tctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcagg 295  Q
    ||||| |||||||| || ||||||| || ||||||  | ||||||| || ||| ||||||||||||||||| |||||    
T  30426384 tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcagg 30426308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 26728 - 26464
Alignment:
Q  85 ttccgcttaaggtctctatttttgcttggaggttgctgaagaaccgtttgcctttaaggcaaaatctggtgcatcgtggtatccttccagctactgttgc 184  Q
    ||||| |||||||||| ||||||||||||||| || ||| ||  || |||||   | || ||||| |||| |||||||| |||||| |||  |||| |||    
T  26728 ttccgtttaaggtctcaatttttgcttggaggctgttgaggagtcgcttgccgacacggaaaaatatggttcatcgtgggatcctttcagacactgctgc 26629  T
Q  185 gtgctgtttgttagggtgcgacgctttggagtcttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggctt 284  Q
      | ||||||||||||||||  ||| | ||| ||||||||||||||||||| |||||||||| |||||| || |||||||||| ||||||| ||||||||    
T  26628 tggttgtttgttagggtgcggagctgtagagacttctcagcatttattcatttcttgtgatttttatggctcgttgtggtctcaggttcgggcttggctt 26529  T
Q  285 ggtgtctcaggtccagatccctttttggtttcaaagcacttctttcaatttactcattcagcagg 349  Q
    || || |||||||| || |||||| | |||||| | || ||| |||| |||||||||||||||||    
T  26528 ggagtttcaggtcccgacccctttattgtttcagatcatttccttcagtttactcattcagcagg 26464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 349
Target Start/End: Original strand, 25019509 - 25019641
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccctttttggtttc 316  Q
    |||||||||||||||| || ||||||| || ||||||  | ||||||| |  ||| ||||||||||||||||||||| | ||||| ||| || | || ||    
T  25019509 cttctcagcatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttggcttggtgtctcatgcccagaccccattattgtctc 25019608  T
Q  317 aaagcacttctttcaatttactcattcagcagg 349  Q
    ||| |||||| |||| ||  |||||||||||||    
T  25019609 aaatcacttccttcagttctctcattcagcagg 25019641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 6343697 - 6343737
Alignment:
Q  81 catgttccgcttaaggtctctatttttgcttggaggttgct 121  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  6343697 catgttccgattaaggtgtctatttttgcttggcggttgct 6343737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 6142 - 6096
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| || ||||| |||||||||||||||||||||    
T  6142 ggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttg 6096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 22504 - 22458
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||||| || ||||| |||||||||||||||||||||    
T  22504 ggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttg 22458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 64834 - 64916
Alignment:
Q  219 tctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccaga 301  Q
    ||||| |||||||| || ||||||| || ||||||  | ||||||| |  ||| |||||||| ||||||||||||||||||||    
T  64834 tctcaacatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttgtcttggtgtctcaggtccaga 64916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 133798 - 133716
Alignment:
Q  219 tctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccaga 301  Q
    ||||| |||||||| || ||||||| || ||||||  | ||||||| |  ||| |||||||| ||||||||||||||||||||    
T  133798 tctcaacatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttgtcttggtgtctcaggtccaga 133716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 22877514 - 22877560
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| |||||| | |||||||| |||||||||||||||||||||    
T  22877514 ggcacaaacatgtttcccttaaggtgtctatttttgcttggaggttg 22877560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 30821930 - 30822008
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcagg 295  Q
    |||||||||||||||| | |||||||  || ||||||  | ||||||  || ||| |||||||||||||||||||||||    
T  30821930 cttctcagcatttatttacctcttgtagtttttatggcactttgtggagtcaggtacggtcttggcttggtgtctcagg 30822008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 40688158 - 40688112
Alignment:
Q  73 ggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg 119  Q
    ||||||| || ||||| |||||||| |||||||||||||||||||||    
T  40688158 ggcacaaacaggttccccttaaggtgtctatttttgcttggaggttg 40688112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 48117313 - 48117231
Alignment:
Q  219 tctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccaga 301  Q
    ||||| |||||||| || ||||||| || ||||||  | ||||||| || ||| ||||||||||||||||| ||||| |||||    
T  48117313 tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccaga 48117231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 54684706 - 54684653
Alignment:
Q  68 gattcggcacaaccatgttccgcttaaggtctctatttttgcttggaggttgct 121  Q
    |||| |||| || ||||||||||||||||| |||||||| |||||| |||||||    
T  54684706 gatttggcataagcatgttccgcttaaggtgtctattttcgcttggcggttgct 54684653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 3794 - 3830
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatgg 253  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  3794 cttctcaacatttattcatctcttgtgatttttatgg 3830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 87246 - 87290
Alignment:
Q  68 gattcggcacaaccatgttccgcttaaggtctctatttttgcttg 112  Q
    |||| ||||||| || |||||||||||||| ||||||||||||||    
T  87246 gatttggcacaaacaggttccgcttaaggtgtctatttttgcttg 87290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 366845 - 366713
Alignment:
Q  217 cttctcagcatttattcatctcttgtgattattatggttcattgtggtctcgggttcggtcttggcttggtgtctcaggtccagatccctttttggtttc 316  Q
    |||||||||||||||| || ||||||  || ||||||  | ||||||  || ||| ||||||||||||||||||| ||| || || ||| || | || ||    
T  366845 cttctcagcatttatttatttcttgtagtttttatggcactttgtggagtcaggtgcggtcttggcttggtgtcttaggccccgaccccattattgtctc 366746  T
Q  317 aaagcacttctttcaatttactcattcagcagg 349  Q
    | | |||||| |||| ||  |||||||||||||    
T  366745 agatcacttccttcagttctctcattcagcagg 366713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University