View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_37 (Length: 369)
Name: NF6021_high_37
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 34686502 - 34686834
Alignment:
| Q |
18 |
taaagttcaatgcaacatttagtatgtatgaaacaacattttataaataccaaaacaagcaatatatttgttttatggagtatagtatagtatttaactt |
117 |
Q |
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| T |
34686502 |
taaagttcaatgcaacatt-agtatgtatgaaacaacatttcataaataccaaaacaaccaatatatttgttttatggagtatagtatagtatttaactt |
34686600 |
T |
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| Q |
118 |
attatatatgcattcagagaccaaaatgactatcac--atagtatagtatatatctaacttaccctatgcgcattccagcatgaccagtggttttggaga |
215 |
Q |
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| T |
34686601 |
attatatatgcattcagagaccaaaatgaccatcactcatagtata----atatctaacttaccctatgcgcattccagcatgaccagtgcttttggaga |
34686696 |
T |
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| Q |
216 |
cagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctatt |
315 |
Q |
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| T |
34686697 |
cagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctatt |
34686796 |
T |
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| Q |
316 |
gaccttagacttcctcacatgtccatcaggattatttg |
353 |
Q |
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| T |
34686797 |
gaccttagacttcctcacatgtccatcaggattatttg |
34686834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 291
Target Start/End: Original strand, 43612595 - 43612712
Alignment:
| Q |
174 |
cttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggcca |
273 |
Q |
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| T |
43612595 |
cttaccctatgcgcgttccagcgtgaccggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggcca |
43612694 |
T |
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| Q |
274 |
gtagtaggcaagatcatg |
291 |
Q |
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| T |
43612695 |
ataataggcaaggtcatg |
43612712 |
T |
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