View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_38 (Length: 369)
Name: NF6021_high_38
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 39989479 - 39989835
Alignment:
| Q |
1 |
accataaacaggtgcttcttatcaaagacgaaacatcaaagaaagaattagaaagaaagtgcctagcaatcatgtctcttttggatattattatgctaat |
100 |
Q |
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| T |
39989479 |
accataaacaggtgcttcttatcaaagacgaaacatcaaagaaagaattagaaagaaagtgcctagcaatcatgtctcttttggatattattatgctaat |
39989578 |
T |
|
| Q |
101 |
ttttccacaagcataattatatattaaagatttaattagattaggggtgttagatatgtttcaacagctttcactaccactaaatcgtgataaggttttc |
200 |
Q |
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| T |
39989579 |
ttttccacaagcataattatatattaaagatttaattagattaggggtgttagatatgtttcaacagctttcactaccactaaatcgtgataaggttttc |
39989678 |
T |
|
| Q |
201 |
ataataaaaaccggacctactccatgattcttttctaatttcaagtgttaaaagattcctaaatctttctcttatgggttgagttaatcggtaggaatcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39989679 |
ataataaaaaccggacctactccatgattcttttctaatttgaagtgttaaaagattcctaaatctttctcttatgggttgagttaattggtaggaatcc |
39989778 |
T |
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| Q |
301 |
aaatcactaatcaatagtcatagtcatgtactttctctcttctatattaatggatatt |
358 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39989779 |
aaatcactaatcaatagtcatagtcatgtactttc-ctcttctatattaatggatatt |
39989835 |
T |
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