View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_4 (Length: 666)
Name: NF6021_high_4
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_4 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 180 - 648
Target Start/End: Complemental strand, 48343541 - 48343055
Alignment:
| Q |
180 |
taaatagtatgaattttggatttatataaaactttgtgtgcctgatcgttaacgattagtgaaatttatattttaacatgagttatcaagataactcatc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48343541 |
taaatagtatgaattttggatttatataaaactttgtgtgcctgatcgttaacgattagtgaaatttatattttaacatgagctatcaagataactcatc |
48343442 |
T |
|
| Q |
280 |
ttagagtaacctctggagtcaacatattcacattctattgtgtgtgtattcatttcataatatactaattaaacgtgttaatccaaagtattgctagcaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48343441 |
ttagagtaacctctggagtcaacatattcacattctattgtgtgtgtattcatttcataatatactaattaaacgtgttaatccaaagtattgctagcaa |
48343342 |
T |
|
| Q |
380 |
accttgtctcgtattttggta-------------annnnnnnnattttggtattatttattacacagtgaatgtaataaaacttgcaagacaaccctact |
466 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48343341 |
accttgtctcgtattttggtatttttttttttttggtacaaatattttggtattatttattacacagtgaatgtaataaaacttgcaagacaaccctact |
48343242 |
T |
|
| Q |
467 |
atagttactccttc-----nnnnnnnnnccctactatagttacaacttacaatacaaacgcaccattgagtgatatgcttcgctatcacattgtatttac |
561 |
Q |
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| T |
48343241 |
atagttactccttcaaaaaaaaaaaaaaccctactatagttacaacttacaatacaaacgcaccattgagtgatatgcttcgctatcacattgtatttac |
48343142 |
T |
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| Q |
562 |
ttcgatgatcgagagcttctaaagactaaaataatctttatatatacattttgttttaaggatctttatatatacatatatacacac |
648 |
Q |
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| T |
48343141 |
ttcgatgatcgagagcttctaaagactaaaataatctttatatatacatattgttttaaggatctttatatatacatatatacacac |
48343055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 48344877 - 48344776
Alignment:
| Q |
1 |
taaaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48344877 |
taaaagccttacaactcttaaaactcattccaccaaacaccttaggagtggaaagtctttcccaagacatccagtgcaagtctcgggaatttgctgaaat |
48344778 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
48344777 |
at |
48344776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 48344743 - 48344679
Alignment:
| Q |
110 |
ccaaaagaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaaacactcat |
174 |
Q |
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| T |
48344743 |
ccaaaggaattttacattttctcaatttcatgagtgagtgaacccggaaggagaaaaagactcat |
48344679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 27176366 - 27176198
Alignment:
| Q |
1 |
taaaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaat |
100 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||| | |
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| T |
27176366 |
taaaagccttaaaactcttaaaacacattccaccaaacaccttaggagtggaaagtctttcctaagatatctagtgcaag---cgagaatttgctgaatt |
27176270 |
T |
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| Q |
101 |
ataaaccccccaaaagaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaaacactcat |
174 |
Q |
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| T |
27176269 |
atgaccccacc--agtaatttgacattttcttaaattcattagtgagtgaacccagaatgagaaaaacactcat |
27176198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 35209172 - 35209248
Alignment:
| Q |
3 |
aaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaa |
79 |
Q |
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| T |
35209172 |
aaagccttaagacttttaaaacccataccaccaaaaaccttaggagtagaaagtctttctcatgacaaccggtgcaa |
35209248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 14221248 - 14221407
Alignment:
| Q |
8 |
cttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaatataaacc |
107 |
Q |
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|||| |||||||||||| |||||||||||||| ||||| | |||||| ||||||| | |||| | | |||||| ||||||| || |||||| ||| | | |
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| T |
14221248 |
cttaaaactcttaaaacccattccaccaaacatcttaggattggaaattctttcctaggacagctactgcaagcctcgagagttagctgaattattaggc |
14221347 |
T |
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| Q |
108 |
ccccaaaa-gaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaa |
166 |
Q |
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| T |
14221348 |
caccaaaaggagtttaacattctctcaatttcattaatgactgatctcggaaggagaaaa |
14221407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 28735865 - 28735815
Alignment:
| Q |
17 |
cttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaaga |
67 |
Q |
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| T |
28735865 |
cttaaaacccattccaccaaacaccttaggaatggaaagacgttcccaaga |
28735815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 18172 - 18063
Alignment:
| Q |
32 |
accaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaatataaaccc-cccaaaagaattttacattttc |
130 |
Q |
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|||||||||||||| | ||| |||||||||||||||| |||||| || ||| ||| ||||||||| ||| ||| || |||||| ||| |||||||| |
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| T |
18172 |
accaaacaccttaggaacggatagtctttcccaagacagccagtgtaatcctcaagagtttgctgaattatgtccccaccaaaaagagtttaacattttc |
18073 |
T |
|
| Q |
131 |
tcaatttcat |
140 |
Q |
| |
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|| ||||||| |
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| T |
18072 |
tctatttcat |
18063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 27454002 - 27454082
Alignment:
| Q |
18 |
ttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaa |
98 |
Q |
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| T |
27454002 |
ttaaaacccatacctccaaacaccttaggaactgaaaggcgttcccaagatagccagtgcaatcctcgagaatttgctgaa |
27454082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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