View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_45 (Length: 356)
Name: NF6021_high_45
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 635866 - 636190
Alignment:
| Q |
19 |
gaacaacatcctaaattgtttaagttgacattttgatcataaagtgaccaatagactgcaataaccaattagaacatgcttctttcaatttttctatgaa |
118 |
Q |
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| T |
635866 |
gaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacatgcttctttcaatttttctatgaa |
635965 |
T |
|
| Q |
119 |
gcacatgttgcctcttcctttactgtcattaatatgtaatagagatcagtcaaatttcgtgaagttcag--nnnnnnnnnnnnnnnnctgcataattact |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
635966 |
gcacatgttgcctcttcctttactgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcagaaaaaacgaaaaaaaaaactgcataattact |
636065 |
T |
|
| Q |
217 |
tttttgtctctatcttcctactaagatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgtgaagcaagtgaagtactttaatg |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
636066 |
tttttgtctctatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgtggagcaagtgaagtactttaatg |
636165 |
T |
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| Q |
317 |
agcaatgctggtgtgagttaaaact |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
636166 |
agcaatgctggtgtgagttaaaact |
636190 |
T |
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