View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_48 (Length: 345)
Name: NF6021_high_48
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 4124346 - 4124659
Alignment:
| Q |
22 |
ccaaccttgagagtggtaataaaatatttgtgtgggtgcatagccannnnnnnaataccaacatacgttggtttagtattactttttgctcaaaatattc |
121 |
Q |
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| T |
4124346 |
ccaaccttgagagtggtaataaaatatttgtgtgagtgcatagccatttttttaataccaacatacgttagtttagtattactttttgctcaaaatattc |
4124445 |
T |
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| Q |
122 |
gggtgccagcattctgctgtgaattttaaaattcagcataatagataggtttgaaattcctctggtttcttttatttactgtgttgatttatggactgat |
221 |
Q |
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| T |
4124446 |
gggtgccagcattctgctgtgaattttaaaattcagcataatagataggtttgaaattcctctggtttcttttatttactgtgttgatttatggactgtt |
4124545 |
T |
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| Q |
222 |
gtgtgaattttgtttgtacttgtatacattgtaactaaattcatagttagggctatgatggatcttttgtattataatcgaactattcatagttttcaac |
321 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
4124546 |
atgtgaattttgtttgtacttatatacattgtaactaaattcatagttagggctatgatggatcttttgtattataatcaaattattcatagttttcaac |
4124645 |
T |
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| Q |
322 |
tgttttgtcctttg |
335 |
Q |
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| T |
4124646 |
tgttttgtcctttg |
4124659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 4360150 - 4360050
Alignment:
| Q |
205 |
ttgatttatggactgatgtgtgaattttgtttgtacttgtatacattgtaactaaattcatagttagggctatgatggatcttttgtattataatcgaac |
304 |
Q |
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|||||||||| ||| | |||| ||||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||||| |||| ||||||| ||| |
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| T |
4360150 |
ttgatttatgtactactatgtggattttgtttatactattatacattgtaaacaaattcattgttagggttatgatggatcttatgtaatataatcaaac |
4360051 |
T |
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| Q |
305 |
t |
305 |
Q |
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| T |
4360050 |
t |
4360050 |
T |
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