View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_5 (Length: 627)
Name: NF6021_high_5
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 27 - 609
Target Start/End: Original strand, 3659353 - 3659919
Alignment:
| Q |
27 |
accacaattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaac |
126 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659353 |
accacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaac |
3659451 |
T |
|
| Q |
127 |
aatctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtc |
226 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3659452 |
aatctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtc |
3659551 |
T |
|
| Q |
227 |
aaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgct |
326 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659552 |
aaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc----------- |
3659640 |
T |
|
| Q |
327 |
ctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3659641 |
----cactatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaac |
3659736 |
T |
|
| Q |
427 |
atctacaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaa |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3659737 |
atctacaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaa |
3659836 |
T |
|
| Q |
527 |
acattaccattctctgcaaatctcacactcttcttcactctaggttgaattacttgcctttgaacaaagacaccatttttgtt |
609 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659837 |
acattaccattctctgcaaatctcacactcttcttcactctaggttgaattacttgcctttgaacaaagacaccatttttgtt |
3659919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 46 - 390
Target Start/End: Original strand, 3653106 - 3653449
Alignment:
| Q |
46 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
144 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
|
| Q |
145 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
244 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
|
| Q |
245 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgt |
3653403 |
T |
|
| Q |
345 |
catcgctactacgtgttgatcctccactgtcctccaccagcacttc |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653404 |
catcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 133 - 390
Target Start/End: Original strand, 3657199 - 3657452
Alignment:
| Q |
133 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
229 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| |||| |||| | | |||||||| || |||| |
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|
| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaa |
3657295 |
T |
|
| Q |
230 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
329 |
Q |
| |
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| ||||| || ||||||||||| || |||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | ||||||||||||| |
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| T |
3657296 |
ttgttcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
|
| Q |
330 |
tcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
390 |
Q |
| |
|
||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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|
| T |
3657392 |
tcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
230 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
329 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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|
| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
330 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
371 |
Q |
| |
|
||||| |||||| | | | |||||||| ||||||||||||| |
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|
| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
230 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
288 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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