View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_59 (Length: 310)

Name: NF6021_high_59
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_59
NF6021_high_59
[»] chr4 (1 HSPs)
chr4 (12-300)||(26845624-26845912)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 26845912 - 26845624
Alignment:
Q  12 tgtaagtgcgtgctatttctactacattgggatctgatgaattatgggcgtttggtgtgagattttgcatcatggatcagagagaacagctaagatttgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26845912 tgtaagtgcgtgctatttctactacattgggatctgatgaattatgggcgtttggtgtgagattttgcatcatggatcagagagaacagctaagatttgg 26845813  T
Q  112 tcagagatgagtatttagtgtgttatctgactttcagaaaaatttggatgagtgccattacaagacctatttattttctgactctctccatgtgtgattc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26845812 tcagagatgagtatttagtgtgttatctgactttcagaaaaatttggatgagtgccattacaagacctatttattttctgactctctccatgtgtgattc 26845713  T
Q  212 tctttctatgagtaaagagggagtgagcaagttggttctgagggttattgctctgtttatttatagtgaaagctttcacactctctgtg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26845712 tctttctatgagtaaagagggagtgagcaagttggttctgagggttattgctctgtttatttatagtgaaagctttcacactctctgtg 26845624  T

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