View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_6 (Length: 588)
Name: NF6021_high_6
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Complemental strand, 50275530 - 50274993
Alignment:
| Q |
17 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccac |
116 |
Q |
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| T |
50275530 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccac |
50275431 |
T |
|
| Q |
117 |
tggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagac |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50275430 |
tggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagac |
50275331 |
T |
|
| Q |
217 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggca |
316 |
Q |
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| T |
50275330 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggca |
50275231 |
T |
|
| Q |
317 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
50275230 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaat |
50275131 |
T |
|
| Q |
417 |
ttattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgataaatgtt |
516 |
Q |
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| T |
50275130 |
tcattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgat------- |
50275038 |
T |
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| Q |
517 |
gtgaatatcatcacattcaaggggatgttatgttgtgacagtgctacgcttgaaact |
573 |
Q |
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| T |
50275037 |
------------acattcaaggggatgttatgttgtgacagtgctacgcttgaaact |
50274993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Complemental strand, 50279554 - 50279017
Alignment:
| Q |
17 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279554 |
tcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccac |
50279455 |
T |
|
| Q |
117 |
tggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagac |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50279454 |
tggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagac |
50279355 |
T |
|
| Q |
217 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50279354 |
aatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggca |
50279255 |
T |
|
| Q |
317 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
50279254 |
acaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaat |
50279155 |
T |
|
| Q |
417 |
ttattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgataaatgtt |
516 |
Q |
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| T |
50279154 |
tcattatggtcagcatttcctaaagaatactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgat------- |
50279062 |
T |
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| Q |
517 |
gtgaatatcatcacattcaaggggatgttatgttgtgacagtgctacgcttgaaact |
573 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279061 |
------------acattcaaggggatgttatgttgtgacagtgctacgcttgaaact |
50279017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
40 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctc |
107 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||| |
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| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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