View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_61 (Length: 300)

Name: NF6021_high_61
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_61
NF6021_high_61
[»] chr4 (1 HSPs)
chr4 (1-300)||(52396358-52396663)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 52396358 - 52396663
Alignment:
Q  1 aaacctgagtgaagatgaagcgttagca---ccgtcgtcttcttcaagaacttcttctttgatatgaattgcgtgagaagctgtagcaccttc---ttct 94  Q
    ||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  52396358 aaacctgagtgaagatgaagcgtgagcagcaccgtcgtcttcttcaagaacttcttctttgatatgaattgcgtgagaagctgtagcaccttcttcttct 52396457  T
Q  95 tcttcggtaagtactgattcttttctttcggttgaaacgtcgtcgtaggtgtaagagctggaatttgcactgtcattgaataactctggttttattgatg 194  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52396458 tcttcggttagtactgattcttttctttcggttgaaacgtcgtcgtaggtgtaagagctggaatttgcactgtcattgaataactctggttttattgatg 52396557  T
Q  195 ggattagacgagaattgtagccaccgatttcaccgtcgtaaccaccgtgtgctaccgccattttatttctttgtttattgggttattcggcgttactctg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52396558 ggattagacgagaattgtagccaccgatttcaccgtcgtaaccaccgtgtgctaccgccattttatttctttgtttattgggttattcggcgttactctg 52396657  T
Q  295 ttttgc 300  Q
    ||||||    
T  52396658 ttttgc 52396663  T

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