View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_66 (Length: 285)
Name: NF6021_high_66
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 53514853 - 53515126
Alignment:
| Q |
1 |
gaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatat |
100 |
Q |
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| T |
53514853 |
gaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctattgtcatat |
53514952 |
T |
|
| Q |
101 |
aatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatatgcagctctctattcaatacttgaagaactatattatgatacat |
200 |
Q |
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| T |
53514953 |
aatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatatgcagctctctattcaatacttgaagaactatattgtgatacat |
53515052 |
T |
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| Q |
201 |
gttagattaattttctcttcaactgtcttatgtattctcatataaatttaggtttaaaatcggtgtcctctcat |
274 |
Q |
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| T |
53515053 |
gttagattaattttctcttcaactgtcttatgtattctcatataaagttaggtttaaaatcggtgtcctctcat |
53515126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 53511152 - 53511337
Alignment:
| Q |
1 |
gaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatat |
100 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| |
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| T |
53511152 |
gaaagttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcattaactaccatgaaaaacctctatctttgtat |
53511251 |
T |
|
| Q |
101 |
aatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatatgcagctctctattcaatacttgaagaact |
186 |
Q |
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| T |
53511252 |
agtttaattttccatgaccctagcctatgcttacagacattacaagtgcaattgtatgcagaactctattcaatacttgaagaact |
53511337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 53525878 - 53525949
Alignment:
| Q |
188 |
tattatgatacatgttagattaattttctcttcaactgtcttatgtattctcatataaatttaggtttaaaa |
259 |
Q |
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| T |
53525878 |
tattgtgataaatgttagattaattttctcttcaactatcttatgtattctcatctaaatttaggttcaaaa |
53525949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 53548992 - 53549078
Alignment:
| Q |
71 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatat |
157 |
Q |
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| T |
53548992 |
aaccacccagaacaacctctatcttcatacaatttagttttccatgagcctagcctatgcttacagactttacaagtgcaattatat |
53549078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 53525323 - 53525469
Alignment:
| Q |
4 |
agtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataat |
103 |
Q |
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| T |
53525323 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
53525416 |
T |
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| Q |
104 |
ttaattttccatgagcctagcctatgcttacagacattacaggtacaattatat |
157 |
Q |
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| T |
53525417 |
ttaatttcccatgagcctagcctatgcttaca-acattacaagtggaattatat |
53525469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 20197525 - 20197573
Alignment:
| Q |
95 |
tcatataatttaattttccatgagcctagcctatgcttacagacattaca |
144 |
Q |
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| T |
20197525 |
tcatataacttaattttccatgagcatagcctatgcttaca-acattaca |
20197573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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