View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_67 (Length: 283)

Name: NF6021_high_67
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_67
NF6021_high_67
[»] chr8 (2 HSPs)
chr8 (9-217)||(40260213-40260421)
chr8 (15-124)||(35226845-35226953)
[»] chr4 (1 HSPs)
chr4 (17-220)||(52543153-52543356)
[»] chr3 (3 HSPs)
chr3 (9-227)||(44904577-44904794)
chr3 (141-216)||(17763830-17763905)
chr3 (141-216)||(19065150-19065225)
[»] chr1 (2 HSPs)
chr1 (9-214)||(3838292-3838497)
chr1 (85-158)||(3418071-3418144)
[»] chr2 (1 HSPs)
chr2 (9-78)||(40599793-40599862)
[»] chr6 (1 HSPs)
chr6 (15-104)||(3532266-3532355)
[»] chr7 (1 HSPs)
chr7 (139-216)||(29502479-29502556)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 40260421 - 40260213
Alignment:
Q  9 gagaagaaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaa 108  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40260421 gagaggaaccacacaaataagaacgataccacattttcacccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaa 40260322  T
Q  109 tcttctactcaatgttaaactataacttatatttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| || |||||||| |||| ||  |||||||    
T  40260321 tcttctactcaatgttaaactataacttatatttgatacatcacaacattatcttcctcaaatatgaagaagttctagcccgtacttggcacagatatcc 40260222  T
Q  209 atactagtt 217  Q
    |||||||||    
T  40260221 atactagtt 40260213  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 35226845 - 35226953
Alignment:
Q  15 aaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaatcttct 114  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||| |||||||  | ||||||||||||||||| ||||||||||| |||||     
T  35226845 aaccacacaaatgagaatgatatcacattttcatccaatattttaaggcactgagtgtat-gagtttttcacttatatgttattcaaccttcactcttcc 35226943  T
Q  115 actcaatgtt 124  Q
    ||||||||||    
T  35226944 actcaatgtt 35226953  T

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Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 52543153 - 52543356
Alignment:
Q  17 ccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaatcttctac 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  52543153 ccacacaaataagaacgataccacattttcacccaatattttaaggcactaagtgtatttatattttcacttatatgttgttcaaccttcaatcttctac 52543252  T
Q  117 tcaatgttaaactataacttatatttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatccatactagt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||| |  |||||||||||||    
T  52543253 tcaatgttagactataacttatatttgatacatcacaacattatcttcatcaaatatgaagaaattttagtccgtgcttgacacgagtatccatactagt 52543352  T
Q  217 ttat 220  Q
    ||||    
T  52543353 ttat 52543356  T

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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 44904794 - 44904577
Alignment:
Q  9 gagaagaaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaa 108  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44904794 gagaggaaccacacaaataagaacgataccacattttcacccaatattttatggcactaagtgtatcaattttt-cacttatatgttgttcaaccttcaa 44904696  T
Q  109 tcttctactcaatgttaaactataacttatatttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||| ||||||||||||| || || ||||     
T  44904695 tcttctactcaatgttaaactataacttatatttgatacatcacaacattatcttcctcaaatatgtagaaattctagcccgtgcttggcacgggtatct 44904596  T
Q  209 atactagtttatatgataa 227  Q
    ||||||||| |||| ||||    
T  44904595 atactagttcatataataa 44904577  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 17763905 - 17763830
Alignment:
Q  141 ttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatccatactagt 216  Q
    ||||||| |||||||||| ||| | | |||||||| |||||| ||||||||||||| || || | |||||||||||    
T  17763905 ttgatacgtcacaacattctttgcctcaaatatgacgaaattctagcccgtgcttggcacgggtgtccatactagt 17763830  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 19065225 - 19065150
Alignment:
Q  141 ttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatccatactagt 216  Q
    ||||||| |||||||||| ||| | | |||||||| |||||| ||||||||||||| || || | |||||||||||    
T  19065225 ttgatacgtcacaacattctttgcctcaaatatgacgaaattctagcccgtgcttggcacgggtgtccatactagt 19065150  T

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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 3838292 - 3838497
Alignment:
Q  9 gagaagaaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaa 108  Q
    |||| |||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3838292 gagaggaaccacaaaaataagaacgataccacattttcatccaatattttaaggcgctaagtgtatcaattttttcacttatatgttgttcaaccttcaa 3838391  T
Q  109 tcttctactcaatgttaaactataacttatatttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatcc 208  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||| |  |||||||||||||| ||||||||||||| || || |||||    
T  3838392 tcttctactcaatgttagactataacttatatttgatatatcacaatattatcttcctctaatatgaagaaattctagcccgtgcttggcacgggtatcc 3838491  T
Q  209 atacta 214  Q
    ||||||    
T  3838492 atacta 3838497  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 3418071 - 3418144
Alignment:
Q  85 acttatatgttgttcaaccttcaatcttctactcaatgttaaactataacttatatttgatacatcacaacatt 158  Q
    ||||||||||||| ||||||||| |||| || ||||| || || | ||||| | ||||||||||| ||||||||    
T  3418071 acttatatgttgtccaaccttcactcttttattcaatattgaaatgtaactgacatttgatacattacaacatt 3418144  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 40599793 - 40599862
Alignment:
Q  9 gagaagaaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaat 78  Q
    |||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  40599793 gagaggaaccacacaaataagaacgatactatattttcacccaatattttaaggcactaagtgtatcaat 40599862  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 3532266 - 3532355
Alignment:
Q  15 aaccacacaaataagaacgataccacattttcgcccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaacct 104  Q
    |||||||||||| |||  |||||||||||||| | |||||||||||||  |||||||||| | ||||||||||| |||||||||||||||    
T  3532266 aaccacacaaatgagattgataccacattttcactcaatattttaaggtcctaagtgtatgagttttttcacttttatgttgttcaacct 3532355  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 29502479 - 29502556
Alignment:
Q  139 atttgatacatcacaacattattttctttaaatatgaagaaattttagcccgtgcttgacatggatatccatactagt 216  Q
    |||||||||||||||| || |||| | |||| ||||| |||||| ||||||||||||| || || | |||||||||||    
T  29502479 atttgatacatcacaatatcatttcccttaagtatgacgaaattctagcccgtgcttggcacgggtgtccatactagt 29502556  T

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