View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_70 (Length: 279)
Name: NF6021_high_70
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 25712091 - 25711829
Alignment:
| Q |
2 |
ttggcattggatttggtaacaaggtaacttgaatgcttcaaaatgataaataatgagtttatgtctttgtgacaacgtcgttcttcaaactgcacttttg |
101 |
Q |
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| T |
25712091 |
ttggcattggatttggtaaccaggtaacttgaatgcttcaaaatgataaataatgagtttatgtctttgtgacaacgtcgttcttcaaactgcacttttg |
25711992 |
T |
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| Q |
102 |
gacatgtatgctaagtgccatctcttatcttatgccagaaaaatcttccaagtcatgtgttagtgaggagagaaaactatctccattccactggtggtag |
201 |
Q |
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| T |
25711991 |
gacatgtatgctaagtgccatct--tatcttatgccagaaaaatcttccaagtcatgtgttagtgaggagagaaaactatctccattccactggtgggag |
25711894 |
T |
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| Q |
202 |
aatgtgtgtaatcaactgtactatataatggaaagagattgaggtctctttctgtttgatgaatg |
266 |
Q |
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| T |
25711893 |
aatgtgtgtaatcaactgtactatataatggaaagagattgaggtctctttctgtttgatgaatg |
25711829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 45554867 - 45554945
Alignment:
| Q |
71 |
tgacaacgtcgttcttcaaactgcacttttggacatgtatgctaagtgccatctcttatcttatgccagaaaaatcttc |
149 |
Q |
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| T |
45554867 |
tgacaacgtcgttcttcaaactgcacttttggacatgtatgctaagtgccatctcttattttatgccagaaaaatcttc |
45554945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 43379820 - 43379884
Alignment:
| Q |
2 |
ttggcattggatttggtaacaaggtaacttgaatgcttcaaaatgataaataatgagtttatgtc |
66 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43379820 |
ttggcattggatttggtaaccaggtaacttgaatgcttcaaaatgataaataatgtgtttatgtc |
43379884 |
T |
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