View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_high_73 (Length: 275)
Name: NF6021_high_73
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_73 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11034449 - 11034193
Alignment:
| Q |
1 |
gctcactgtaattatggttggtatatatgcaattctgcgctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034449 |
gctcactgtaattatggttggtatatatgcaattctgctctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcg |
11034350 |
T |
|
| Q |
101 |
atcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034349 |
atcttccacacccatttgttagagtgagtgctactaattaacactcaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggct |
11034250 |
T |
|
| Q |
201 |
tggatagttgcacgtttatcgagtcgcataggtaagcaagacataagacttaaaata |
257 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11034249 |
tggatagttgcatgtttatcgagtcgcacaggtaagcaagacataagacttaaaata |
11034193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 11009056 - 11008834
Alignment:
| Q |
2 |
ctcactgtaattatggttggtatatat--gcaattctgcgctttagatactctatttttt-caagttggttgcttaatttt-cttttatttacaattaca |
97 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| || |||| |||| |||||||||||||| ||| || | ||||||||||| || ||||||||||| | |
|
|
| T |
11009056 |
ctcactgtaaatatggttggtatatatatgcagttgtgcgatttatatactctatttttttcaatttcgatgcttaatttttctattatttacaatcgcg |
11008957 |
T |
|
| Q |
98 |
tcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtg |
197 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||| ||| || ||||||| |||||||||||| | | |
|
|
| T |
11008956 |
tggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgtttgctcttgcagattactggaataacgcg |
11008857 |
T |
|
| Q |
198 |
gcttggatagttgcacgtttatc |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11008856 |
gcttggatagttgcacgtttatc |
11008834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University