View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_77 (Length: 265)

Name: NF6021_high_77
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_77
NF6021_high_77
[»] chr1 (4 HSPs)
chr1 (152-256)||(28666770-28666874)
chr1 (105-228)||(41941005-41941131)
chr1 (105-186)||(30848889-30848967)
chr1 (185-226)||(44608575-44608616)
[»] chr6 (7 HSPs)
chr6 (68-183)||(9627226-9627333)
chr6 (16-166)||(1415476-1415618)
chr6 (1-127)||(33908614-33908728)
chr6 (184-229)||(33908741-33908786)
chr6 (137-187)||(10384091-10384141)
chr6 (59-127)||(12155933-12155998)
chr6 (180-225)||(9405126-9405171)
[»] chr5 (3 HSPs)
chr5 (39-152)||(41715022-41715128)
chr5 (137-229)||(38755532-38755625)
chr5 (1-128)||(7237103-7237225)
[»] chr8 (5 HSPs)
chr8 (1-136)||(14958008-14958138)
chr8 (21-90)||(15292613-15292680)
chr8 (21-90)||(15472982-15473049)
chr8 (161-230)||(34697194-34697263)
chr8 (187-229)||(34695916-34695958)
[»] chr2 (3 HSPs)
chr2 (99-184)||(38288563-38288647)
chr2 (110-163)||(31395291-31395341)
chr2 (1-45)||(38288476-38288520)
[»] chr4 (2 HSPs)
chr4 (64-184)||(3284192-3284307)
chr4 (16-91)||(865295-865368)
[»] chr3 (4 HSPs)
chr3 (137-171)||(8540980-8541014)
chr3 (137-171)||(8543031-8543065)
chr3 (1-42)||(43361690-43361731)
chr3 (16-86)||(11630060-11630128)
[»] scaffold0035 (1 HSPs)
scaffold0035 (51-134)||(24407-24487)
[»] scaffold0027 (1 HSPs)
scaffold0027 (147-228)||(43790-43870)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 28666874 - 28666770
Alignment:
Q  152 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666874 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 28666775  T
Q  252 tcttc 256  Q
    |||||    
T  28666774 tcttc 28666770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 41941131 - 41941005
Alignment:
Q  105 gaatcagggtttcagtgttacaagcaatatattata-tagtactactacgattcagtttacaatattactcctgaaccgtac---cttgccttcttccgt 200  Q
    |||| ||||||||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||||||| ||| |||||||    | |||||||||   |    
T  41941131 gaattagggtttcaatgttacaagtaatatat-atactactactactacgattcagtttacaatattacccctaaaccgtatactcatgccttctttaat 41941033  T
Q  201 gtcttgtatatatgagccatacttcaac 228  Q
    |||||||||||||||| |||||||||||    
T  41941032 gtcttgtatatatgagtcatacttcaac 41941005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 30848967 - 30848889
Alignment:
Q  105 gaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagtttacaatattactcctgaaccgtacc 186  Q
    |||| ||||||| |||| ||||| ||||||||   ||||||| ||||| ||||||||||||||||||| | |||||||||||    
T  30848967 gaattagggtttaagtggtacaaacaatatat---atagtaccactacaattcagtttacaatattacccttgaaccgtacc 30848889  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 44608575 - 44608616
Alignment:
Q  185 ccttgccttcttccgtgtcttgtatatatgagccatacttca 226  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||    
T  44608575 ccttgacttcttcagtgtcttctatatatgagccatacttca 44608616  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 9627226 - 9627333
Alignment:
Q  68 agcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagtttacaat 167  Q
    |||| ||||||||| |||||||| |||||   ||| ||||| ||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  9627226 agcagctatagttctgtttctatcactgt---gataagaattagggtttcagtgttacaagcaatata-----tagtactactacgattcagtttacaat 9627317  T
Q  168 attactcctgaaccgt 183  Q
    ||||| ||| ||||||    
T  9627318 attacccctaaaccgt 9627333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 1415618 - 1415476
Alignment:
Q  16 gatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtt 115  Q
    |||| ||||||||| |||| | ||||||||| |||  |||||||||  |||||||| ||||||||| |||||||||| ||   |||| ||||| ||||||    
T  1415618 gatacttgttaacgcagttcggccaattgtggcta--cctctacgattatagagcagctatagttctgtttctattattg---tgataagaattagggtt 1415524  T
Q  116 tcagtgttacaagcaatatattatatagtactactacgattcagtttacaa 166  Q
    ||| |||||||||   ||   ||||||||||||||| ||||||||||||||    
T  1415523 tcaatgttacaagttgta---tatatagtactactatgattcagtttacaa 1415476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33908614 - 33908728
Alignment:
Q  1 agacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctattactgtactg 100  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||  ||||       | |||||||  |||||||||||||||||||||||   ||    
T  33908614 agacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcc--tacc-------ctatagagctgctatagttccgtttctattactg---tg 33908701  T
Q  101 attagaatcagggtttcagtgttacaa 127  Q
    ||  |||| ||||||||||||||||||    
T  33908702 ataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 33908741 - 33908786
Alignment:
Q  184 accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 229  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33908741 accttaccttcttcagtgtcttgtatatatgagccatacttcaaca 33908786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 10384091 - 10384141
Alignment:
Q  137 tatatagtactactacgattcagtttacaatattactcctgaaccgtacct 187  Q
    ||||||| ||||||||||||||||||| |||||||| | ||||||||||||    
T  10384091 tatatagaactactacgattcagtttataatattacccatgaaccgtacct 10384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 12155933 - 12155998
Alignment:
Q  59 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaa 127  Q
    |||| |||| |||||||||||||||||||||||||||   |||| ||||| ||| ||||||||||||||    
T  12155933 cgactatagggcaactatagttccgtttctattactg---tgataagaattaggatttcagtgttacaa 12155998  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 9405171 - 9405126
Alignment:
Q  180 ccgtaccttgccttcttccgtgtcttgtatatatgagccatacttc 225  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||    
T  9405171 ccgtcccttgccttctttagtgtcttgtatatatgagccatacttc 9405126  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 41715128 - 41715022
Alignment:
Q  39 caattgtgcctatacctctacgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatatta 138  Q
    ||||||||||||  |||||||||| |||||||| |||||||||||||||||||||||   |||| ||||| |||| ||||||||||||||||||||| ||    
T  41715128 caattgtgccta--cctctacgacgatagagcatctatagttccgtttctattactg---tgatgagaat-aggggttcagtgttacaagcaatata-ta 41715036  T
Q  139 tatagtactactac 152  Q
    |||||||| |||||    
T  41715035 tatagtaccactac 41715022  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 38755625 - 38755532
Alignment:
Q  137 tatatagtactactacgattcagtttacaatattactcctgaaccgt-accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 229  Q
    ||||||| |||||||||| |||| ||||||||||||  ||||||||| || |||||||||||  | |||| |||||||||| ||||||||||||    
T  38755625 tatatagcactactacgactcaggttacaatattaccactgaaccgtaacattgccttcttcaatatcttctatatatgagtcatacttcaaca 38755532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7237103 - 7237225
Alignment:
Q  1 agacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctattactgtactg 100  Q
    ||||||||||| || ||||||||||| || |||| | |||||| ||  | ||||||| || | |||||||| ||||| |||| ||| ||||||||   ||    
T  7237103 agacaatgaacacacgatatttgttaccgcagttcggccaattttg--tctacctctgcggctatagagcagctataattccatttttattactg---tg 7237197  T
Q  101 attagaatcagggtttcagtgttacaag 128  Q
    || ||||| |||||||| ||||||||||    
T  7237198 ataagaattagggtttcggtgttacaag 7237225  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 14958138 - 14958008
Alignment:
Q  1 agacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctattactgtactg 100  Q
    |||||||||||  | |||||||||||||  |||| | |||||||||||||  ||||| |||  |||||||| ||||||||  ||||||||||||||   |    
T  14958138 agacaatgaacataggatatttgttaacacagttcggccaattgtgccta--cctctgcgattatagagcagctatagttatgtttctattactgt---g 14958044  T
Q  101 attagaatcagggtttcagtgttacaagcaatatat 136  Q
    |  ||||| |||||||||||||||||||||||||||    
T  14958043 agaagaattagggtttcagtgttacaagcaatatat 14958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 15292613 - 15292680
Alignment:
Q  21 ttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctat 90  Q
    ||||||||| |||| ||||||||||||||||  ||||||||| ||| |||||||||||||  ||||||||    
T  15292613 ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaactatagttttgtttctat 15292680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 15472982 - 15473049
Alignment:
Q  21 ttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctat 90  Q
    ||||||||| |||| ||||||||||||||||  ||||||||| ||| |||||||||||||  ||||||||    
T  15472982 ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaactatagttttgtttctat 15473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 34697263 - 34697194
Alignment:
Q  161 ttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaa 230  Q
    |||||||||||   |||||  ||||||| |||||||| |||||||||||||||||| | |||||||||||    
T  34697263 ttacaatattatctctgaattgtacctttccttcttctgtgtcttgtatatatgagtcgtacttcaacaa 34697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 34695958 - 34695916
Alignment:
Q  187 ttgccttcttccgtgtcttgtatatatgagccatacttcaaca 229  Q
    ||||||||||| | |||||||||||||||| ||||||||||||    
T  34695958 ttgccttcttcggagtcttgtatatatgagtcatacttcaaca 34695916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 38288563 - 38288647
Alignment:
Q  99 tgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagtttacaatattactcctgaaccgta 184  Q
    |||| ||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||  ||||||||||||| ||| |||||||    
T  38288563 tgatgagaattagggtttcaatgttataagcaatatat-atataatactactacgattctctttacaatattacccctaaaccgta 38288647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 31395291 - 31395341
Alignment:
Q  110 agggtttcagtgttacaagcaatatattatatagtactactacgattcagttta 163  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||| ||||    
T  31395291 agggtttcagtgttacaagcaata---tatatagtactactacgattcaattta 31395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38288476 - 38288520
Alignment:
Q  1 agacaatgaacgcatgatatttgttaacgtagtttgaccaattgt 45  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||||    
T  38288476 agacaattaacacatgatatttgttaacgtagttcggccaattgt 38288520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 3284192 - 3284307
Alignment:
Q  64 atagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatat-agtactactacgattcagttt 162  Q
    ||||| ||| ||||||||||||| |||||||||   |||  |||| ||||||| || ||||||||||| |||| |||| | ||||||||| ||| |||||    
T  3284192 atagaacaattatagttccgtttttattactgt---gat--gaattagggttttagcgttacaagcaaaatat-atattactactactacaattaagttt 3284285  T
Q  163 acaatattactcctgaaccgta 184  Q
    |||||||||||| |||||||||    
T  3284286 acaatattactcttgaaccgta 3284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 865295 - 865368
Alignment:
Q  16 gatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgtttctatt 91  Q
    ||||||||||||||| ||| || ||||||||  |||  ||||||||| |||||| | ||||| |||||||||||||    
T  865295 gatatttgttaacgtggttcgatcaattgtgtttat--ctctacgactatagagtagctataattccgtttctatt 865368  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 8541014 - 8540980
Alignment:
Q  137 tatatagtactactacgattcagtttacaatatta 171  Q
    |||||||||||||||||||||||||||||||||||    
T  8541014 tatatagtactactacgattcagtttacaatatta 8540980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 8543065 - 8543031
Alignment:
Q  137 tatatagtactactacgattcagtttacaatatta 171  Q
    |||||||||||||||||||||||||||||||||||    
T  8543065 tatatagtactactacgattcagtttacaatatta 8543031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43361731 - 43361690
Alignment:
Q  1 agacaatgaacgcatgatatttgttaacgtagtttgaccaat 42  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  43361731 agacaatgaacacatgatatttgttaacgtagtttggccaat 43361690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 11630128 - 11630060
Alignment:
Q  16 gatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaactatagttccgttt 86  Q
    |||||||||||||  |||||| ||||||||||  |||| |||||||| ||| ||||| |||||||||||||    
T  11630128 gatatttgttaacacagtttggccaattgtgc--atacatctacgactataaagcaattatagttccgttt 11630060  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 24487 - 24407
Alignment:
Q  51 tacctctacgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatat 134  Q
    ||||||| |||| |||||||| || ||||||||||||||||||   | |||| ||| | || ||||| ||||||||||||||||    
T  24487 tacctctgcgactatagagcagctgtagttccgtttctattac---agtgataagacttagagtttcggtgttacaagcaatat 24407  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 43790 - 43870
Alignment:
Q  147 tactacgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaac 228  Q
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T  43790 tactacaattcaatttaca-tattacccctaaaccgtcccttgccttcttcaatatcttctatatatgagtcatatttcaac 43870  T

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