View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_80 (Length: 260)

Name: NF6021_high_80
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_80
NF6021_high_80
[»] chr2 (11 HSPs)
chr2 (1-243)||(39139743-39139987)
chr2 (110-243)||(39471660-39471793)
chr2 (110-211)||(39452050-39452151)
chr2 (110-192)||(39420029-39420111)
chr2 (115-215)||(39204564-39204663)
chr2 (111-177)||(39179531-39179597)
chr2 (110-182)||(39224534-39224606)
chr2 (110-175)||(39156676-39156741)
chr2 (111-215)||(39379710-39379812)
chr2 (39-85)||(39455121-39455168)
chr2 (119-184)||(39126050-39126113)
[»] chr7 (2 HSPs)
chr7 (106-243)||(19810002-19810139)
chr7 (1-79)||(19810141-19810218)
[»] chr5 (2 HSPs)
chr5 (115-213)||(17060996-17061095)
chr5 (112-215)||(33563145-33563253)
[»] chr8 (1 HSPs)
chr8 (126-184)||(45343524-45343583)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39139987 - 39139743
Alignment:
Q  1 tcatcaaaacataccagaacaaacataagttctggttaacaaaaaaccaaggaaattggactgaataattcaaaatccatcaaaccatttataacatgg- 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  39139987 tcatcaaaacataccagaacaaacataagttctggttaacaaaaaaccaaggaaattggtctgaataattcaaaatccatcaaaccatttataacatgga 39139888  T
Q  100 -gagatacatgaagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggg 198  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39139887 agagatacatgaagagagatgaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaacaaatgatagaactgttgggg 39139788  T
Q  199 gaaacaaaatgaagccagctacatgagttccatttcgtaccaagt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39139787 gaaacaaaatgaagccagctacatgagttccatttcgtaccaagt 39139743  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 39471660 - 39471793
Alignment:
Q  110 aagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatg 209  Q
    ||||||| |||| || | |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||     
T  39471660 aagagaggtaaaattcatgtctatttcattttccaatcattaacaccaagatgtcaattttctcttaacaaatgatagaactgttagcggacacaaaata 39471759  T
Q  210 aagccagctacatgagttccatttcgtaccaagt 243  Q
    ||||||  ||| ||||||| ||||| ||||||||    
T  39471760 aagccaattacgtgagttcaatttcataccaagt 39471793  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 39452151 - 39452050
Alignment:
Q  110 aagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatg 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||    
T  39452151 aagagagatacatttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaatgagacaacagttgggggaaacaaaatg 39452052  T
Q  210 aa 211  Q
    ||    
T  39452051 aa 39452050  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 39420029 - 39420111
Alignment:
Q  110 aagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactg 192  Q
    ||||||||||||||| |||| ||||||||||| || |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  39420029 aagagagataaatttcaagtatatttcattttacaagcattaacacaaagatgtcaattttctcttaacaaatgacagaactg 39420111  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 39204564 - 39204663
Alignment:
Q  115 agataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagcc 214  Q
    |||||||||| |||||||||||||| || | ||||||| || ||||||||||||||||| ||| |||||  ||| ||||| |||||||||||||||||||    
T  39204564 agataaatttcaagtctatttcattctcaaagcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgtt-ggggaaacaaaatgaagcc 39204662  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 39179597 - 39179531
Alignment:
Q  111 agagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaa 177  Q
    |||||||||||||| ||||||| ||||||||| | ||||||| ||||||||||||||||||||||||    
T  39179597 agagagataaatttcaagtctaattcattttcaaagcattaaaaccaagatgtcaattttctcttaa 39179531  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 39224606 - 39224534
Alignment:
Q  110 aagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaat 182  Q
    ||||||||||||||| || ||| |||||||||| | ||||||| |||||| ||||||||||||||||| ||||    
T  39224606 aagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaat 39224534  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 39156741 - 39156676
Alignment:
Q  110 aagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctctt 175  Q
    ||||||||| | ||| || |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  39156741 aagagagatcagtttcaattctatttcattttccaagcattaacaccaagttgtcaattttgtctt 39156676  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 39379710 - 39379812
Alignment:
Q  111 agagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatga 210  Q
    |||||||||||| |||||| ||| |||| ||||| | ||||||||||||| ||||||| ||||| || ||| |  ||||||| ||||||||||||||| |    
T  39379710 agagagataaatatgaagtttatctcatattccaag-attaacaccaagacgtcaattctctctaaacaaaggtgagaactg-tgggggaaacaaaatta 39379807  T
Q  211 agcca 215  Q
    |||||    
T  39379808 agcca 39379812  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 39455168 - 39455121
Alignment:
Q  39 acaaaaaaccaaggaaa-ttggactgaataattcaaaatccatcaaac 85  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  39455168 acaaaaaactaaggaaaattggactgaataactcaaaatccatcaaac 39455121  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 39126113 - 39126050
Alignment:
Q  119 aaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatga 184  Q
    ||||||||||| |||||||||||||| |||||    ||||||| ||||||||||||||| ||||||    
T  39126113 aaatttgaagtttatttcattttccaagcatt--ggccaagatttcaattttctcttaacaaatga 39126050  T

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Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 19810139 - 19810002
Alignment:
Q  106 catgaagagagataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaa 205  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  19810139 catgaagagagataaatttgaagtctatttgattttccaagcattaacactatgatgtcaattttctcttaacaaatgatagaactgttaggggaaacaa 19810040  T
Q  206 aatgaagccagctacatgagttccatttcgtaccaagt 243  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  19810039 aatgaagccaactacacgagttccatttcgtaccaagt 19810002  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19810218 - 19810141
Alignment:
Q  1 tcatcaaaacataccagaacaaacataagttctggttaacaaaaaa-ccaaggaaattggactgaataattcaaaatcca 79  Q
    |||||||||||||||||||  |||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  19810218 tcatcaaaacataccagaa--aacataagttctagttaacaaaaaaaccaagaaaattggactgaataattcaaaatcca 19810141  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 17061095 - 17060996
Alignment:
Q  115 agataaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaa-aaaatgatagaactgttgggggaaacaaaatgaagc 213  Q
    ||||||||||  ||||||||||||||||||   ||||||||||||||||||||||||| | || ||||||| | ||||||| ||||||||||||| ||||    
T  17061095 agataaattttgagtctatttcattttccaaaaattaacaccaagatgtcaattttctttcaacaaaatgacaaaactgttaggggaaacaaaataaagc 17060996  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 33563253 - 33563145
Alignment:
Q  112 gagagataaatttgaagtctatttcattttccacgcattaac------accaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaa 205  Q
    ||||||||||||| ||||||||||||||||| | |||||||       | |||||||||||||||||||||| |||||  ||| ||||| || |||||||    
T  33563253 gagagataaatttcaagtctatttcattttcaaagcattaagtttaaaatcaagatgtcaattttctcttaacaaatgtgagatctgtt-ggtgaaacaa 33563155  T
Q  206 aatgaagcca 215  Q
    ||||||||||    
T  33563154 aatgaagcca 33563145  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 45343583 - 45343524
Alignment:
Q  126 aagtctatttcattttccacgcattaacacc-aagatgtcaattttctcttaaaaaatga 184  Q
    |||||||||||||||||||  ||||||| || |||||||||||||||| |||| ||||||    
T  45343583 aagtctatttcattttccaaacattaacgcccaagatgtcaattttctattaacaaatga 45343524  T

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