View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_84 (Length: 258)
Name: NF6021_high_84
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_84 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 28667058 - 28667300
Alignment:
| Q |
1 |
actctaatctctcttgacaaaatttgcactaaatgtacgacttgcagttatctaattttatctaaactcaagtacaattgttatctaattttattatcct |
100 |
Q |
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| T |
28667058 |
actctaatctctcttgacaaaatttgcactaaatgtacgaattgcagtta--------------aactcaagtacaattgttatctaattttattatcca |
28667143 |
T |
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| Q |
101 |
tttattacaatttgatcatacaaaattctttgatttaattttaaggatgctagcataaaagacaaacaaatgttcgatcttagctatgagaggtgtatgc |
200 |
Q |
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| T |
28667144 |
tttattacaatttgatcatacaaaattctatgatttaattttaaggatgctagc-taaaagacaaacaaatgttcgatcttagctatgagaggtgtatgc |
28667242 |
T |
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| Q |
201 |
atttagtgtacgaccatgaactcatgcctcgaacaaaattactcatatagtctagcgg |
258 |
Q |
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| T |
28667243 |
atttagtgtacgaccatgaactcgtgcctcgaacaaaattactcatatggtctagcgg |
28667300 |
T |
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