View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_9 (Length: 549)
Name: NF6021_high_9
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 276 - 549
Target Start/End: Complemental strand, 10368546 - 10368273
Alignment:
| Q |
276 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtta |
375 |
Q |
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| T |
10368546 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtta |
10368447 |
T |
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| Q |
376 |
atgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcnnnn |
475 |
Q |
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| T |
10368446 |
atgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcaaaa |
10368347 |
T |
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| Q |
476 |
nnntaaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcat |
549 |
Q |
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| T |
10368346 |
aaataaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcat |
10368273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 10368784 - 10368687
Alignment:
| Q |
38 |
aggggtgagatcgaactgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttg |
135 |
Q |
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| T |
10368784 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagtacgggttg |
10368687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 11659653 - 11659585
Alignment:
| Q |
42 |
gtgagatcgaactgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
110 |
Q |
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| T |
11659653 |
gtgagatcgaaatgcaaacccataccttgaaatagtagcctccttcttgttcttgctgtccttttcaat |
11659585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 11668822 - 11668754
Alignment:
| Q |
42 |
gtgagatcgaactgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
110 |
Q |
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| T |
11668822 |
gtgagatcgaaatgcaaaccgataccttgaaatagtagcctccttcttctttttgctgtccttttcaat |
11668754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 53239290 - 53239235
Alignment:
| Q |
72 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagc |
127 |
Q |
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| T |
53239290 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagc |
53239235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 2170405 - 2170350
Alignment:
| Q |
72 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagc |
127 |
Q |
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| T |
2170405 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagc |
2170350 |
T |
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