View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_100 (Length: 240)
Name: NF6021_low_100
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 49907969 - 49908175
Alignment:
| Q |
19 |
ccaacaccctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcgtgttatttgcatatatgtgcatgccattttt |
118 |
Q |
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| T |
49907969 |
ccaacaccctaaaacatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcgtgttatttgcatatatgtgcatgccattttt |
49908068 |
T |
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| Q |
119 |
tcaccttgaactgttacaagtcatttttgctttaagatattgttcactgtttgaaatgaaaaacatatctgaggccttgatatgattacaattcttattc |
218 |
Q |
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| T |
49908069 |
tcaccttgaactgttagaagtcatttttgctttaagattttcttcactgtctgaaatgaaaaacatatctgaggccttgatatgattacaattcttattc |
49908168 |
T |
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| Q |
219 |
ttatatt |
225 |
Q |
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||||||| |
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| T |
49908169 |
ttatatt |
49908175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 33818107 - 33818061
Alignment:
| Q |
41 |
atttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcg |
87 |
Q |
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| T |
33818107 |
atttcataattcgaaccaggtgagaagggtgggaaaagaaaccctcg |
33818061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 11644246 - 11644180
Alignment:
| Q |
20 |
caacaccctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctc |
86 |
Q |
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||||||||| || |||||||||||| | |||| |||||||||||||||| || ||||||||||||| |
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| T |
11644246 |
caacaccctgaaacatttcggatttgataatctgaaccaggtgagaaagttgtaaaaagaaactctc |
11644180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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