View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_101 (Length: 239)
Name: NF6021_low_101
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33866312 - 33866090
Alignment:
| Q |
1 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866312 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaag |
33866213 |
T |
|
| Q |
101 |
aaattgaaaatggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866212 |
aaattgaaaatggtggtcatctcttagtcttacctt-aaaaaaatagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcat |
33866114 |
T |
|
| Q |
201 |
gtaacgacaacagctgacgaaatt |
224 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
33866113 |
gtaacgacaaaagctgacgaaatt |
33866090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11075585 - 11075362
Alignment:
| Q |
1 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataa-aaaatatcaagtaagaacccgaaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11075585 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaaatatcaagtaagaacccgaaa |
11075486 |
T |
|
| Q |
100 |
gaaattgaaaatggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagca |
199 |
Q |
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| T |
11075485 |
gaaattgaaaatggtggtcatctcttagtcttacctt-aaaaatatagcgtgagtcgagaagaacaattctgttgccggaaacacatggtgaattgagca |
11075387 |
T |
|
| Q |
200 |
tgtaacgacaacagctgacgaaatt |
224 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
11075386 |
tgtaacgacaaaagctgacgaaatt |
11075362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23216380 - 23216602
Alignment:
| Q |
1 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23216380 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaagagtagaaatagatgaataaaaaatatcaagtaagaacccgaaag |
23216479 |
T |
|
| Q |
101 |
aaattgaaaatggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23216480 |
aaattgaaaatggtggtcatctcttaatcttacctt-aaaaaaatagcgtgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgaacat |
23216578 |
T |
|
| Q |
201 |
gtaacgacaacagctgacgaaatt |
224 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
23216579 |
gtaacgacataagctgacgaaatt |
23216602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23216283 - 23216341
Alignment:
| Q |
1 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagt |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
23216283 |
tgcgagcttcaaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaanagt |
23216341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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