View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_103 (Length: 238)
Name: NF6021_low_103
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_103 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2011878 - 2012099
Alignment:
| Q |
1 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011878 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
2011977 |
T |
|
| Q |
101 |
aagtgtttgtaagcttgacttgatctatcttgaactatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagat |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011978 |
aagtatttgtaagcttgacttgatctatcttgaactatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagat |
2012077 |
T |
|
| Q |
201 |
ctctgtactcacatgttgtttc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2012078 |
ctctgtactcacatgttgtttc |
2012099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 1968748 - 1968531
Alignment:
| Q |
5 |
tcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagt |
104 |
Q |
| |
|
|||||| ||| |||| ||||||||||||| |||| ||| | |||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||| |
|
|
| T |
1968748 |
tcctctttcattgcacttataggtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagt |
1968649 |
T |
|
| Q |
105 |
gtttgtaagcttgacttgatctatcttgaactatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctct |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||| |||||| ||||| |||| ||| ||||||||||| | |||||| |
|
|
| T |
1968648 |
gtttgtaaacttgacttgatctatcttgagctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctct |
1968549 |
T |
|
| Q |
205 |
gtactcacatgttgtttc |
222 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
1968548 |
atactcacatgatgtttc |
1968531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 1964816 - 1964692
Alignment:
| Q |
1 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
100 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1964816 |
tccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
1964717 |
T |
|
| Q |
101 |
aagtgtttgtaagcttgacttgatc |
125 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
1964716 |
aagtgtttgtaatcttgacttgatc |
1964692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 2008267 - 2008484
Alignment:
| Q |
5 |
tcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagt |
104 |
Q |
| |
|
|||||| ||| |||| ||| ||| ||||| || ||||||| |||||||||||||||||||||||||||| |||||||| ||||||| | | ||||||| |
|
|
| T |
2008267 |
tcctctttcattgcacttagaggacccatctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagt |
2008366 |
T |
|
| Q |
105 |
gtttgtaagcttgacttgatctatcttgaactatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| || || |||| ||| ||||||||| | | |||||| |
|
|
| T |
2008367 |
gtttgtaagcttgacttgatctatcttgagctatgctcaagaaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctct |
2008466 |
T |
|
| Q |
205 |
gtactcacatgttgtttc |
222 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
2008467 |
atactcacatgatgtttc |
2008484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2004883 - 2005105
Alignment:
| Q |
1 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
100 |
Q |
| |
|
|||||| ||| ||| |||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | || ||| |
|
|
| T |
2004883 |
tccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaagaacaccatcagcaaaacttaaaagtttaagaagtgcgagg |
2004982 |
T |
|
| Q |
101 |
aagtgtttgtaagcttgacttgatctatcttgaactatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagat |
200 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| | | ||| ||||||||||||||||| |||||| || || |||| ||| |||||| |||| | || |
|
|
| T |
2004983 |
aattgtttgtaagcttgacttgacctatcttgagttgggctcatgagatccctgccatggattggtacacaacctggtatttttataggcactggtatat |
2005082 |
T |
|
| Q |
201 |
ctctgtactcacatgttgtttct |
223 |
Q |
| |
|
||| |||||||||| ||||||| |
|
|
| T |
2005083 |
ctccatactcacatgatgtttct |
2005105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2433041 - 2432965
Alignment:
| Q |
1 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaac |
77 |
Q |
| |
|
|||||| ||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2433041 |
tccttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaac |
2432965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1963152 - 1962938
Alignment:
| Q |
1 |
tccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaagg |
100 |
Q |
| |
|
|||||| ||||||| ||| | |||||| ||| |||| ||||| | ||||||||||| ||||||||||||| || || || ||| |||| ||| || |
|
|
| T |
1963152 |
tccttcatctgtcattgcttctataggacccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggaga |
1963053 |
T |
|
| Q |
101 |
aagtgtttgtaagcttgacttgatctatcttgaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggaga |
199 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||| |
|
|
| T |
1963052 |
aagaacttgtaagattgacttgatctatcttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaaga |
1962954 |
T |
|
| Q |
200 |
tctctgtactcacatg |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1962953 |
tctctgtactcacatg |
1962938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 2018692 - 2018881
Alignment:
| Q |
33 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaagcttgacttgatctatcttg |
132 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||||| || || || ||| |||| ||| ||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
2018692 |
tttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttg |
2018791 |
T |
|
| Q |
133 |
aactatggtcaa-gagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttc |
222 |
Q |
| |
|
| || ||||||| |||||| ||||| | |||||| ||||| |||| || ||||||||| | |||||| |||||| ||||| |||||| |
|
|
| T |
2018792 |
agct-tggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttc |
2018881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 18189931 - 18189895
Alignment:
| Q |
186 |
taggctctgggagatctctgtactcacatgttgtttc |
222 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttc |
18189895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University