View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_106 (Length: 232)
Name: NF6021_low_106
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_106 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 6577498 - 6577715
Alignment:
| Q |
15 |
tattcaactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgggcctttaattgaattatcactagtttc |
114 |
Q |
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| T |
6577498 |
tattcaactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcaaacataaacggtgttgggcctttaattgaattatcactagtttc |
6577597 |
T |
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| Q |
115 |
tgtaggttggttttcttcaaaagctttttcaatatccttaggttcgtgtgagggccctcctggtagtatatatactgccaaccctgtcttatcttcatca |
214 |
Q |
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| T |
6577598 |
tgtagcttggttttcttcaaaagctttttcaatatccttaggttcgtgtgagggccctcctggtagtatatatactgccaaccctgtcttatcttcatca |
6577697 |
T |
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| Q |
215 |
agaatagcaaactgattt |
232 |
Q |
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| T |
6577698 |
agaatagcaaactgattt |
6577715 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 34243927 - 34243722
Alignment:
| Q |
27 |
aagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgggcctttaattgaattatcactagtttctgtaggttggtt |
126 |
Q |
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| T |
34243927 |
aagcacctaatggcgtagaaaagatacgatcaacttcagtttcaaacataaatggtgtcgggccacgaattgaaccaacattagtctctgtaggttgatt |
34243828 |
T |
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| Q |
127 |
ttcttcaaaagctttttcaatatccttaggttcgtgtgagggccctcctggtagtatatatactgccaaccctgtcttatcttcatcaagaatagcaaac |
226 |
Q |
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| T |
34243827 |
ttcttcaaaaactttatcattgtccttgacttcttgggaggtccctcctggcagagtatacagagctaaccctgtcctgtcctcatcaagtatggcaaac |
34243728 |
T |
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| Q |
227 |
tgattt |
232 |
Q |
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| T |
34243727 |
tgattt |
34243722 |
T |
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