View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_114 (Length: 224)
Name: NF6021_low_114
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 15325003 - 15325198
Alignment:
| Q |
18 |
aaaaacgagacataaacatacaactatagcagaatttagaagaaatatctatataatttatgcaatttgaccgattagacctacgaaaattgttcaatag |
117 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
15325003 |
aaaaacgagacataaacacagaactatagcagaatttagaagaaatatctatataatttatgcaatttgaccgattagacctaagaaaattgtttaatag |
15325102 |
T |
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| Q |
118 |
gtccctctaaacgtttaaaagcctttgaaaatccaaa-----aatgcctctatcaagaattacaaaccgaaccctctcgggtcctaactttcgctc |
208 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15325103 |
gtccatctaaacgtttaaaggcctttgaaaatccaaaatattaatgcctctatcaagaattacaaaccgaaccctctcgggtcctaactttcgctc |
15325198 |
T |
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