View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_117 (Length: 217)
Name: NF6021_low_117
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_117 |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 50275881 - 50276097
Alignment:
| Q |
1 |
agaaagtatgtgaaatacatcagcttttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttca |
100 |
Q |
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| T |
50275881 |
agaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttca |
50275980 |
T |
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| Q |
101 |
ttatcgcccatttgagaatttatagctgatcttatgtcattgattagtcgtcgatgctcatctacccaacgagcatagtccatatcaaatgctaccgaac |
200 |
Q |
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| T |
50275981 |
ttatcacccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcgtctacccaacgagcatagtccatatcaaatgctaccgaac |
50276080 |
T |
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| Q |
201 |
ctgaaggtttaaaatac |
217 |
Q |
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| T |
50276081 |
ctgaaggtttaaaatac |
50276097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 50279905 - 50280121
Alignment:
| Q |
1 |
agaaagtatgtgaaatacatcagcttttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttca |
100 |
Q |
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| T |
50279905 |
agaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttca |
50280004 |
T |
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| Q |
101 |
ttatcgcccatttgagaatttatagctgatcttatgtcattgattagtcgtcgatgctcatctacccaacgagcatagtccatatcaaatgctaccgaac |
200 |
Q |
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| T |
50280005 |
ttatcacccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcgtctacccaacgagcatagtccatatcaaatgctaccgaac |
50280104 |
T |
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| Q |
201 |
ctgaaggtttaaaatac |
217 |
Q |
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| T |
50280105 |
ctgaaggtttaaaatac |
50280121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 50287709 - 50287765
Alignment:
| Q |
161 |
tctacccaacgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatac |
217 |
Q |
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| T |
50287709 |
tctacccaacgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatac |
50287765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14462602 - 14462383
Alignment:
| Q |
1 |
agaaagtatgtgaaatacatcagcttttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaaga---tgcagt |
97 |
Q |
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| T |
14462602 |
agaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagaagatgcagt |
14462503 |
T |
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| Q |
98 |
tcattatcgcccatttgagaatttatagctgatcttatgtcattgattagtcgtcgatgctcatctacccaacgagcatagtccatatcaaatgctaccg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462502 |
tcattatcgcccatttgagaatttatagctgatcttatgtcattgatttgtcgttcatgctcatctacccaacgagcatagtccatatcaaatgctaccg |
14462403 |
T |
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| Q |
198 |
aacctgaaggtttaaaatac |
217 |
Q |
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| T |
14462402 |
aacctgaaggtttaaaatac |
14462383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 22610200 - 22610065
Alignment:
| Q |
8 |
atgtgaaatacatcagcttttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttcattatcgc |
107 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||| | |||| |||| || |||| ||| |||||||| ||||| ||||||| ||||||||| | |
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| T |
22610200 |
atgtgaaatacatcagtctttgcccctatgctctttaacctaaataactcattatgatgtgacataacaccatcgacaagcagatgcaattcattatcac |
22610101 |
T |
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| Q |
108 |
ccatttgagaatttatagctgatcttatgtcattga |
143 |
Q |
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| T |
22610100 |
ccatttgagaatttaacgccgatcttagatcattga |
22610065 |
T |
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