View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_118 (Length: 216)
Name: NF6021_low_118
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_118 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 38111670 - 38111493
Alignment:
| Q |
21 |
ggcttagcatcaaataaaggaaatgttaagacaaattatgagcctaagatcaatatacaagtttcatgaatcctcccattttattattattattgcaata |
120 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
38111670 |
ggcttagcatcaactaaaggaattgttaagacaaattatgagcataagatcaatatacaagtttcatgaatcctcctatttcattattattattgcaata |
38111571 |
T |
|
| Q |
121 |
agatctactatttcatcaaaatcataatcaagcaactaaaattgacagataaatgcattaaaaaatggtgggaagtat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
38111570 |
agatctactatttcatcaaaatcataatcaagcaactaaaattgacagataaatccattaaaaaatggtggaaagtat |
38111493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 38117639 - 38117502
Alignment:
| Q |
21 |
ggcttagcatcaaataaaggaaatgttaagacaaattatgagcctaagatcaatatacaagtttcatgaatcctcccattttattattattattgcaata |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| || |
|
|
| T |
38117639 |
ggcttagcatcaaataaaggaagtgttaagacaagttatgagcctaagatcaatataaaagtttcatgaatcctcctatttcattattattattgcagta |
38117540 |
T |
|
| Q |
121 |
agatctactatttcatcaaaatcataatcaagcaacta |
158 |
Q |
| |
|
|| |||| ||||| |||||||||||| | ||||||||| |
|
|
| T |
38117539 |
agctctaatatttgatcaaaatcatattaaagcaacta |
38117502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University