View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_119 (Length: 215)

Name: NF6021_low_119
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_119
NF6021_low_119
[»] chr1 (1 HSPs)
chr1 (20-200)||(6494424-6494604)
[»] chr2 (3 HSPs)
chr2 (62-173)||(44514374-44514485)
chr2 (117-189)||(44692115-44692187)
chr2 (126-186)||(40920203-40920263)
[»] chr5 (1 HSPs)
chr5 (125-186)||(40754641-40754702)
[»] chr3 (1 HSPs)
chr3 (69-150)||(43074691-43074772)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 6494604 - 6494424
Alignment:
Q  20 atagccgccctaacatcaccacctccctcaaccaagtcagcgatgttattaccatatttctccatgagaacctcattccaaagtgtatcttctccaatca 119  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6494604 atagccaccctaacatcaccacctccctcaaccaagtcaccgatgttattaccatatttctccatgagaacctcattccaaagtgtatcttctccaatca 6494505  T
Q  120 ataacctccacctccatttagccaacaaactaacattaacaacccttatatccctcacccctagaccacccctatcctttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  6494504 ataacctccacctccatttagccaacaaactaacattaacaacccttatatctctcaccccaagaccacccctatcctttg 6494424  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 44514374 - 44514485
Alignment:
Q  62 atgttattaccatatttctccatgagaacctcattccaaagtgtatcttctccaatcaataacctccacctccatttagccaacaaactaacattaacaa 161  Q
    |||| ||||||||||||||| |  |||||||| |||||||| | ||  ||| |  |||| |||||||| |||||||| ||||||||||||||||| || |    
T  44514374 atgtgattaccatatttctctacaagaacctctttccaaagggcatgatcttcgttcaacaacctccatctccatttggccaacaaactaacattcacca 44514473  T
Q  162 cccttatatccc 173  Q
    |||| |||||||    
T  44514474 ccctaatatccc 44514485  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 44692187 - 44692115
Alignment:
Q  117 tcaataacctccacctccatttagccaacaaactaacattaacaacccttatatccctcacccctagaccacc 189  Q
    ||||||||||||||||||| |||||||| | ||||| ||| || ||||| |  ||||||||||| ||||||||    
T  44692187 tcaataacctccacctccacttagccaaaagactaagattcaccaccctaacgtccctcaccccaagaccacc 44692115  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 40920263 - 40920203
Alignment:
Q  126 tccacctccatttagccaacaaactaacattaacaacccttatatccctcacccctagacc 186  Q
    |||| |||||||||||||| |  |||| ||| || ||||||||||||||||| ||||||||    
T  40920263 tccatctccatttagccaaaaggctaatattcaccacccttatatccctcacacctagacc 40920203  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 40754641 - 40754702
Alignment:
Q  125 ctccacctccatttagccaacaaactaacattaacaacccttatatccctcacccctagacc 186  Q
    ||||| |||||||| ||||||||||| |||||||| ||||| | |||||| ||||| |||||    
T  40754641 ctccatctccatttcgccaacaaactcacattaaccaccctaacatccctaaccccaagacc 40754702  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 43074691 - 43074772
Alignment:
Q  69 taccatatttctccatgagaacctcattccaaagtgtatcttctccaatcaataacctccacctccatttagccaacaaact 150  Q
    |||||||||||||||  || ||||| |||||||| |  || || ||| |||| |||||||||||||| ||||| ||||||||    
T  43074691 taccatatttctccactagcacctccttccaaagagcctcctcaccattcaacaacctccacctccacttagctaacaaact 43074772  T

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