View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_12 (Length: 518)
Name: NF6021_low_12
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Original strand, 44460692 - 44461179
Alignment:
| Q |
14 |
gaagtacacagatatgaaattgagaagttattaatagctgcaaagcattaaattaggcatctcacttttaacaaacagacaaagtttcaagctccccttt |
113 |
Q |
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| T |
44460692 |
gaagtgcacagatatgaaattgagaagttattaatagctgcaaagcattaaattaggcatctcacttttaacaaacagacaaagtttcaagctccccttt |
44460791 |
T |
|
| Q |
114 |
actcaaagtttcagctaatcacttccatcatctattatatttaccatcataactggtaggttcctatgatccatgtaattaaaaatgaattcctactata |
213 |
Q |
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| T |
44460792 |
actcaaagtttcagctaatcacttccatcatctattatatttaccgtcataactggtaggttcctatgatccatgtaagtaaaaatgaattcctactata |
44460891 |
T |
|
| Q |
214 |
ctattgtcacagaaaaactctagcaagctgtagtttataaatgagattaaggacagtaaactatttaaaacaaacacaagaacnnnnnnngcagggaaat |
313 |
Q |
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| T |
44460892 |
ctattgtcacagaaaaactctagcatgctgtagtttataaatgagattaaggacagtaaattatttaaaacaaacacaagaacaaaaaaagcagggaaat |
44460991 |
T |
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| Q |
314 |
tacttcattttgaagcttctccttataaaaaccagctgctagagttgcatttgttgcaagcactccaatcctcaaaggactaccagcttcaagtggcttt |
413 |
Q |
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| T |
44460992 |
tacttcattttgaagcttctccttataaaaaccagctgctagagttgcatttgttgcaagcactccaatcctcaaaggactaccagcttcaagtggcttt |
44461091 |
T |
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| Q |
414 |
aacttagcttccttaagctcctttgcaacacactcagccatatgaagaaaaggaacagaacaacctatggatacttgttcatgccaag |
501 |
Q |
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| T |
44461092 |
aacttagcttccttaagctcctttgcaacacactcagccatatgaagaaaaggaacagaacaacctatggatacttgttcataccaag |
44461179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 495
Target Start/End: Complemental strand, 25517108 - 25516947
Alignment:
| Q |
340 |
aaaaaccagctgctagagttgcatttgttgcaagcactccaatcctcaaag------gactaccagcttcaagtggctttaacttagcttccttaagctc |
433 |
Q |
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| T |
25517108 |
aaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaaaggacttctagtttcatgggtccttaacttagtttcctttagctc |
25517009 |
T |
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| Q |
434 |
ctttgcaacacactcagccatatgaagaaaaggaacagaacaacctatggatacttgttcat |
495 |
Q |
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| T |
25517008 |
tttggcaacacactcagccataagaagaaaagggacagaacatccctttgatacttgttcat |
25516947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 25525063 - 25525123
Alignment:
| Q |
411 |
tttaacttagcttccttaagctcctttgcaacacactcagccatatgaagaaaaggaacag |
471 |
Q |
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| T |
25525063 |
tttaacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacag |
25525123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 495
Target Start/End: Original strand, 25537563 - 25537671
Alignment:
| Q |
387 |
aaaggactaccagcttcaagtggctttaacttagcttccttaagctcctttgcaacacactcagccatatgaagaaaaggaacagaacaacctatggata |
486 |
Q |
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||||||||| || ||||||| |||||||||||| ||| || | ||| || |||||||||||| ||||||||| ||||| |||||||| || || ||| |
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| T |
25537563 |
aaaggactagcaacttcaaggggctttaacttaatttcatttatctctttggcaacacactcattcatatgaaggaaagggacagaacatcccttgaata |
25537662 |
T |
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| Q |
487 |
cttgttcat |
495 |
Q |
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||||||||| |
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| T |
25537663 |
cttgttcat |
25537671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 25540532 - 25540576
Alignment:
| Q |
346 |
cagctgctagagttgcatttgttgcaagcactccaatcctcaaag |
390 |
Q |
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| T |
25540532 |
cagctcctagagttgcatttgttgcgagcactcgaatcctcaaag |
25540576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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