View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_121 (Length: 210)
Name: NF6021_low_121
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9123511 - 9123713
Alignment:
| Q |
1 |
gtttcttcctttccaagctacctttattgtaaccaaacatattactttgtgcatccaatatgctatccacaacatgttgcttctcaaccnnnnnnnccac |
100 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
9123511 |
gtttcttcctttccaagctaccattattgcaaccaaacaaattactttgtgcatccaatatgctatccacaacatgttgcttcttaaccttcttttccac |
9123610 |
T |
|
| Q |
101 |
ggaattcggacacttcttctcttcaaattcaaactttcttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123611 |
ggaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcctttg |
9123710 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
|
|
| T |
9123711 |
ctt |
9123713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9131618 - 9131820
Alignment:
| Q |
1 |
gtttcttcctttccaagctacctttattgtaaccaaacatattactttgtgcatccaatatgctatccacaacatgttgcttctcaaccnnnnnnnccac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
9131618 |
gtttcttcctttccaagctaccattattgcaaccaaacaaattactttgtgcatccaatatgctatccacaacatgttgcttcttaaccttcttttccac |
9131717 |
T |
|
| Q |
101 |
ggaattcggacacttcttctcttcaaattcaaactttcttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcctttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131718 |
ggaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcctttg |
9131817 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
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|
| T |
9131818 |
ctt |
9131820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 9113578 - 9113615
Alignment:
| Q |
166 |
atccacaagcttttgtgacattttcctttcctttgctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
9113578 |
atccacaagcttttgtgacattttcctttcctttgctt |
9113615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 24525379 - 24525581
Alignment:
| Q |
1 |
gtttcttcctttccaagctacctttattgtaaccaaacatattactttgtgcatccaatatgctatccacaacatgttgcttctcaaccnnnnnnnccac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||| | |||||||||||||| |||| |||| |
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|
| T |
24525379 |
gtttcttcctttccaagctaccattattgcaaccaaacaaattactttgtgcatctaatatgctatctataacatgttgcttcttaaccttcttttccac |
24525478 |
T |
|
| Q |
101 |
ggaattcggacacttcttctcttcaaattcaaactttcttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcctttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525479 |
agaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactgcaagacattgatccacaagcttttgtgacattttcctttcctttg |
24525578 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
|
|
| T |
24525579 |
ctt |
24525581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 39814861 - 39814788
Alignment:
| Q |
126 |
aattcaaactttcttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttccttt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||| ||||| |||| |||||||||||||||| ||| |||| |
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|
| T |
39814861 |
aattcaaacttccttttatttcttgcaccacatgacactgatctacaaacttttgtgacattttcatttgcttt |
39814788 |
T |
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