View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_125 (Length: 201)

Name: NF6021_low_125
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_125
NF6021_low_125
[»] chr6 (6 HSPs)
chr6 (13-195)||(14821638-14821820)
chr6 (80-195)||(6395791-6395904)
chr6 (80-195)||(6427438-6427550)
chr6 (145-195)||(6410958-6411008)
chr6 (80-128)||(6417578-6417626)
chr6 (80-126)||(19633429-19633475)
[»] chr7 (2 HSPs)
chr7 (81-193)||(15091284-15091396)
chr7 (80-133)||(10616194-10616247)
[»] chr5 (6 HSPs)
chr5 (13-67)||(20477027-20477081)
chr5 (77-121)||(20477106-20477150)
chr5 (155-193)||(12846954-12846992)
chr5 (81-131)||(17206970-17207020)
chr5 (155-193)||(28660959-28660997)
chr5 (155-193)||(29022050-29022088)
[»] chr4 (2 HSPs)
chr4 (82-144)||(53759968-53760030)
chr4 (81-126)||(1547373-1547418)
[»] chr3 (1 HSPs)
chr3 (96-130)||(51763081-51763115)
[»] chr8 (1 HSPs)
chr8 (156-193)||(32152224-32152261)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 14821820 - 14821638
Alignment:
Q  13 gttcactgccaatgaaaaggaagaggataacttcttctctccaatcttcttcacagcaaattattttatatttacccgatgattgttgggaatctatctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821820 gttcactgccaatgaaaaggaagaggataacttcttctctccaatcttcttcacagcaaattattttatatttacccgatgattgttgggaatctatctt 14821721  T
Q  113 caaattcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821720 caaattcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatc 14821638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 6395904 - 6395791
Alignment:
Q  80 atatttacccga-tgattgttgggaatctatcttcaaattcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagtt 178  Q
    |||||||||||| ||| ||||||||||   |||||| |||| ||| ||||||  |||||||| ||   ||||  | ||||||||||||||||||||||||    
T  6395904 atatttacccgactgagtgttgggaatgcgtcttcagattccttaacaacaaggatgacgaatac---ttgaggtctctctccctcgtctccaagcagtt 6395808  T
Q  179 cctctctatcaccaatc 195  Q
    |||||| ||||||||||    
T  6395807 cctctccatcaccaatc 6395791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 6427550 - 6427438
Alignment:
Q  80 atatttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttc 179  Q
    ||||||||| ||||| ||||||||||   |||||  |||| | ||||||||   ||||||||||   ||||  | |||||||||||||||||||||||||    
T  6427550 atatttacctgatgagtgttgggaatgggtcttcggattcctcatcaacaaggctgacgaaaac---ttgagttctctctccctcgtctccaagcagttc 6427454  T
Q  180 ctctctatcaccaatc 195  Q
    ||||| ||||||||||    
T  6427453 ctctccatcaccaatc 6427438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 6411008 - 6410958
Alignment:
Q  145 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatc 195  Q
    ||||||| | |||||||||||||||||||||||||||||| || |||||||    
T  6411008 gcttgaattctctctccctcgtctccaagcagttcctctccattaccaatc 6410958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 6417626 - 6417578
Alignment:
Q  80 atatttacccgatgattgttgggaatctatcttcaaattcattatcaac 128  Q
    ||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  6417626 atatttacccgatgagtgttgggaacttatcttcaaattcatcatcaac 6417578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 19633475 - 19633429
Alignment:
Q  80 atatttacccgatgattgttgggaatctatcttcaaattcattatca 126  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||    
T  19633475 atatttacctgatgagtgttgggaatctatcttcgaattccttatca 19633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 15091284 - 15091396
Alignment:
Q  81 tatttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttcc 180  Q
    |||||||||||||| ||||||||||   |||||| |||||| |||||| ||||  || ||    ||||||| | |||||||||||||||||| |||||||    
T  15091284 tatttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgacaacaacaaatcttgcttgaattctctctccctcgtctccaaacagttcc 15091383  T
Q  181 tctctatcaccaa 193  Q
    |||| ||||||||    
T  15091384 tctccatcaccaa 15091396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 10616247 - 10616194
Alignment:
Q  80 atatttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaa 133  Q
    ||||||||| ||||| |||||||||| |||||||||||| ||  ||||||||||    
T  10616247 atatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaa 10616194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 20477027 - 20477081
Alignment:
Q  13 gttcactgccaatgaaaaggaagaggataacttcttctctccaatcttcttcaca 67  Q
    ||||| |||||||||||||||||| || | ||||||||||| |||||||||||||    
T  20477027 gttcaatgccaatgaaaaggaagatgacagcttcttctctcaaatcttcttcaca 20477081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 20477106 - 20477150
Alignment:
Q  77 tttatatttacccgatgattgttgggaatctatcttcaaattcat 121  Q
    ||||||||||||||| || |||||||||||||| |||||||||||    
T  20477106 tttatatttacccgacgactgttgggaatctattttcaaattcat 20477150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 12846992 - 12846954
Alignment:
Q  155 tctctccctcgtctccaagcagttcctctctatcaccaa 193  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaa 12846954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 17206970 - 17207020
Alignment:
Q  81 tatttacccgatgattgttgggaatctatcttcaaattcattatcaacaac 131  Q
    |||||||  ||||| |||||| ||||||||||||||||||| |||||||||    
T  17206970 tatttactagatgaatgttggaaatctatcttcaaattcatcatcaacaac 17207020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 28660959 - 28660997
Alignment:
Q  155 tctctccctcgtctccaagcagttcctctctatcaccaa 193  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  28660959 tctctcccttgtctcgaagcagttcctctctatcaccaa 28660997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 29022088 - 29022050
Alignment:
Q  155 tctctccctcgtctccaagcagttcctctctatcaccaa 193  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  29022088 tctctccctcgtctccaagcagtttctctctatctccaa 29022050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 53759968 - 53760030
Alignment:
Q  82 atttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaatgacgaaaaca 144  Q
    ||||||| ||||| || |||||||||||||||||| || | ||||||||||| ||| ||||||    
T  53759968 atttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaacaaggacaaaaaca 53760030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 1547373 - 1547418
Alignment:
Q  81 tatttacccgatgattgttgggaatctatcttcaaattcattatca 126  Q
    |||||||| || || |||||||||||||||||||||||||| ||||    
T  1547373 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 1547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 51763081 - 51763115
Alignment:
Q  96 tgttgggaatctatcttcaaattcattatcaacaa 130  Q
    |||||||||||||||||||||||||| ||||||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaa 51763115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 32152261 - 32152224
Alignment:
Q  156 ctctccctcgtctccaagcagttcctctctatcaccaa 193  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  32152261 ctctccctcgtctccaaacagttcctctccatcaccaa 32152224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University