View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_13 (Length: 499)
Name: NF6021_low_13
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 301 - 486
Target Start/End: Original strand, 25952432 - 25952614
Alignment:
| Q |
301 |
aaggagtataaggctataaaactaattaaaaggttaggaaatgtaaattaaagtgttggaaaatgatagagtagcaattttatcacataaaaatataatc |
400 |
Q |
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| T |
25952432 |
aaggagtataaggctataaaactaattaaaaggttaggaaatgtaaattaaagtgttggaaaatgatagagtagcaattttatcacataaaaatataatc |
25952531 |
T |
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| Q |
401 |
ataggtttatgttaaaatttgttttcgactcaattattataaaagttatttttaaagctagtagggttagaaagaaggtatgatat |
486 |
Q |
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| T |
25952532 |
ataggcttatgttaaaatttgtattcgactca---attataaaagttatttttaaagctagtagggttagaaagacggtatgatat |
25952614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 25952289 - 25952319
Alignment:
| Q |
19 |
gtgcccaaatcccacattgtaagcatatgtt |
49 |
Q |
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| T |
25952289 |
gtgcccaaatcccacattgtaagcatatgtt |
25952319 |
T |
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