View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_15 (Length: 465)
Name: NF6021_low_15
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 202 - 453
Target Start/End: Original strand, 47344716 - 47344967
Alignment:
| Q |
202 |
atacaagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47344716 |
atacaagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatg |
47344815 |
T |
|
| Q |
302 |
cttgcgctaaacatgagcactactatttgttggtggcctggaaaaaacaaccctatagctgttatggcatataccattagactatgtttacttttcagtc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47344816 |
cttgcgctaaacatgagcactactatttgttggtcgcctggaaaaaacaaccctataggtgttatggcatataccattagactatgtttacttttcagtc |
47344915 |
T |
|
| Q |
402 |
aatattgcatacaacgatggcttaaatttctgaactaaaggttaatgcccta |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47344916 |
aatattgcatacaacgatggcttaaatttctgaactaaaggttaatgcccta |
47344967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 47344531 - 47344656
Alignment:
| Q |
17 |
aaatggaagatagttggtcatttttggacaaattatttttacaaacgaatcagttattttggaacggagggagtgggacactaatattttctttattcct |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47344531 |
aaatggaagatagttggtcattttcggacaaattatttttacaaaggaatcagttattttggaacggagggagtgggacactaatattttctttattcct |
47344630 |
T |
|
| Q |
117 |
tgcttcttgtatttgccatgcttcat |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47344631 |
tgcttcttgtatttgccatgcttcat |
47344656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 1495098 - 1495190
Alignment:
| Q |
205 |
caagcaaaatcaaggcatttcattaattaaaatttgggttatacagaacagacggaaacatgataaaaaatagcgtgaggagaatacgatagggatgc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1495098 |
caagcaaaatcaaggcatttcattaattaaaatttgggttat-----acagacggaaacataataaaaaatagtgtgaggagaatacgatagggatgc |
1495190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 1495189 - 1495288
Alignment:
| Q |
337 |
gcctggaaaaaacaaccctata--gctgttatggc----atataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1495189 |
gcctggaaaaaacaaccctataagtgtgttatggcatatatataccattagactatgtttacttttcagtcaatattgcatacaacgatggcttaaattt |
1495288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 11827782 - 11827722
Alignment:
| Q |
82 |
ggagggagtgggacactaatattttctttattccttgcttcttgtatttgccatgcttcat |
142 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
11827782 |
ggagggagtagtacactagtattttctttattccttgcttcttatatttgcgttgcttcat |
11827722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University