View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_17 (Length: 442)
Name: NF6021_low_17
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 9877027 - 9876670
Alignment:
| Q |
10 |
aagaatatgcagaactgaataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccata |
109 |
Q |
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| T |
9877027 |
aagaacatgcagaactgaataacatatagagagaaaaggcttagtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccata |
9876928 |
T |
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| Q |
110 |
gaaatttcttcaataaaacaacttatctctgatttcttctccattatttctctcttaccactcttcatatttcaccaaccttccttaatttcttccttct |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9876927 |
gaaagttcttcaataaaacaacttatctctgatttcttctccattatttctctcttaccacgcttcatatttcaccaaccttccttaatttcttccttct |
9876828 |
T |
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| Q |
210 |
ccgtacaactagggttcnnnnnnnnnnnnnnnnnnnaatgtaccacactactatggatttcaagtttcttctttaaggaacaagtcttgcaagctcaact |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9876827 |
ccgtacaactagggttctatatataataaatatataaatgtaccacactactatggatttcaagtttcttctttaaggaacaagtcttgcaagctcaact |
9876728 |
T |
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| Q |
310 |
atatattaaattattattataccaagtaccttgtcaaagcttcttagacttgaattaa |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9876727 |
atatattaaattattattataccaagtaccttgtcaaagcttcttagacttgaattaa |
9876670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 9871364 - 9871183
Alignment:
| Q |
27 |
aataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccatagaaatttcttcaataaa |
126 |
Q |
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|||||||||||||||| |||||||| | || || |||||||||||| | |||||| ||| ||||||||||| || | |||||||| ||||||||||| |
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| T |
9871364 |
aataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaactatcacaatcatagaaagctcttcaataaa |
9871265 |
T |
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| Q |
127 |
acaacttatctctgatttcttctccattatttctctcttaccactcttcatatttcaccaaccttccttaatttcttccttctcc |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
9871264 |
acaacttatctctgatttcttctcc---atttctctctttgcactcttcatatttcactaaccttccttactttcttccttctcc |
9871183 |
T |
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