View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_19 (Length: 436)

Name: NF6021_low_19
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_19
NF6021_low_19
[»] chr3 (3 HSPs)
chr3 (20-392)||(6751771-6752144)
chr3 (23-272)||(6466502-6466752)
chr3 (95-132)||(13501824-13501861)
[»] chr8 (3 HSPs)
chr8 (25-392)||(6956499-6956867)
chr8 (95-132)||(13524666-13524703)
chr8 (95-132)||(13614201-13614238)
[»] chr7 (4 HSPs)
chr7 (25-262)||(22009932-22010170)
chr7 (302-386)||(22010176-22010260)
chr7 (95-132)||(21503517-21503554)
chr7 (95-131)||(5085079-5085115)
[»] chr2 (1 HSPs)
chr2 (26-360)||(21272783-21273118)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-132)||(204702-204739)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 6751771 - 6752144
Alignment:
Q  20 accgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatttccaccatttctccaccaaaaagaattcatcattttc 119  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  6751771 accgcttcttttatggacatataacttgtaccatgaaagccacctgattcccttatttctatttccaccatttccccaccaaaaagaattcatcattttt 6751870  T
Q  120 tcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagattggagtacatatttaatcatcacctcttttcccgcct 218  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  6751871 tcgatttcatcaccaagagatgagggaatcagaaaaatactcataaaataggtaggaatagattggagtgcagatttaatcatcacctcttttcccgcct 6751970  T
Q  219 tagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtctttcttgctcctccctatcatggaaggaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6751971 tagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtctttcttgctcctccctatcatggaaggaag 6752070  T
Q  319 gctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggcttctgcac 392  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6752071 gccgagatatttatcgatttcaattgcaatgttgacttgtaagatatttgatatgttcactttggcttctgcac 6752144  T

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Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 6466752 - 6466502
Alignment:
Q  23 gcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatttccaccatttctccaccaaaaagaattcatcattttctcg 122  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||    
T  6466752 gcttcttttatggacatataacttgtcccatgaaagccacctgattcccttatttctatttccaccattttcccaccaaaaataattcatgattttctcg 6466653  T
Q  123 atttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagattggagtacatatttaatcatcacctcttttcccgccttag 221  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6466652 atttcatcaccaagagatgagggaatcaaaaaaatacttataaaataggtaggaatagattggagtatatatttaatcatcacctcttttcccgccttag 6466553  T
Q  222 ataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 272  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6466552 ataaagagcgtcctccccatgaattgatcttccttcatacttggtccttaa 6466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 13501861 - 13501824
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatcac 132  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13501861 ccaccaaaaagaattcatcattttctcaatttcatcac 13501824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 392
Target Start/End: Original strand, 6956499 - 6956867
Alignment:
Q  25 ttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatttccaccatttctccaccaaaaagaattcatcattttctcgat 124  Q
    |||||||||||||| |||| || |||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  6956499 ttcttttatggacatataatttatcccatgaaagccacctgattctcttatttctattttcaccatttccccaccaaaaagaattcatcattttctcgat 6956598  T
Q  125 ttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagattggagtacatatttaatcatcacctcttttcccgccttagat 223  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  6956599 ttcatcaccaagagatgagggaattagaaaaatactcatgaaataggtaggaatagattggagtacagatttaatcatcacctcttttcccgccgtagat 6956698  T
Q  224 aaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggctga 323  Q
    |||||||||| ||||||||| |||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||  ||    
T  6956699 aaagagcgtcatccccatgacttgatcttcctccatattcgatccttaatgaatttaaacaagtctttcttgctcctccctgtcatggaaggaaggtcga 6956798  T
Q  324 gatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggcttctgcac 392  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6956799 gatatttaccggttccaattgcaatgttgacttgtaagatattcgatatgttcactttggcttctgcac 6956867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 13524666 - 13524703
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatcac 132  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13524666 ccacaaaaaagaattcatcattttctcaatttcatcac 13524703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 13614201 - 13614238
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatcac 132  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13614201 ccacaaaaaagaattcatcattttctcaatttcatcac 13614238  T

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Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 25 - 262
Target Start/End: Original strand, 22009932 - 22010170
Alignment:
Q  25 ttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatttccaccatttctccaccaaaaagaattcatcattttctcgat 124  Q
    |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  22009932 ttcttttatggacaaataatttgtcccatgaaagccacctgattcccttatttctatttccaccatttccctaccataaagaattcatcattttctcgat 22010031  T
Q  125 ttcatcaccaagagatgagggaa-tcggaaaatactcataaaataggtaggaatagattggagtacatatttaatcatcacctcttttcccgccttagat 223  Q
    ||||||||||||||||||||||| | | |||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  22010032 ttcatcaccaagagatgagggaattagaaaaatacttataaagtaggtaggaatagattggagtacagatttaatcatcaccacttttcccgccttagat 22010131  T
Q  224 aaagagcgtcctccccatgaattgatcttcctccatact 262  Q
    |||||||| |||||||  || ||||||||||||||||||    
T  22010132 aaagagcgccctcccctagagttgatcttcctccatact 22010170  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 22010176 - 22010260
Alignment:
Q  302 cctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggctt 386  Q
    ||||||| |||||||||||  || ||||||||| ||  |||||||||||||||||||||||||||  ||||||  ||||||||||    
T  22010176 cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaagatattcaatatgtttactttggctt 22010260  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 21503554 - 21503517
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatcac 132  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21503554 ccaccaaaaagaattcatcattttctcaatttcatcac 21503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 5085115 - 5085079
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatca 131  Q
    |||||||||||| |||||||| |||||||||||||||    
T  5085115 ccaccaaaaagagttcatcatcttctcgatttcatca 5085079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 360
Target Start/End: Original strand, 21272783 - 21273118
Alignment:
Q  26 tcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatttccaccatttctccaccaaaaagaattcatcattttctcgatt 125  Q
    ||||||||||||  |||  || ||||| || ||| || |||||||||| || |||||||||||||||  |||||||||||||||||| |||||||| |||    
T  21272783 tcttttatggacggatagtttatcccacgatagccacttgattcccttgttcctatttccaccattttcccaccaaaaagaattcatgattttctcaatt 21272882  T
Q  126 tcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagattggagtacatatttaatcatcacctcttttcccgccttagata 224  Q
    || || |||| |||||| |||||  ||||| ||||||| || ||||||||||||||||| || ||| |||||||||||| || ||||||| |||||||||    
T  21272883 tcgtctccaatagatgatggaattagaaaaatactcatgaagtaggtaggaatagattgaagcacagatttaatcatcaacttttttcccaccttagata 21272982  T
Q  225 aagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggctgag 324  Q
    |||||||||||||||| || || ||||||||||| |||  |||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||  ||    
T  21272983 aagagcgtcctccccacgagttaatcttcctccacactcagtccttaatgtatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaag 21273082  T
Q  325 atatttaccgatttcaattgcaatgttgacttgtaa 360  Q
    ||||||| || || | ||||||||||||| ||||||    
T  21273083 atatttatcggttcctattgcaatgttgatttgtaa 21273118  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 204702 - 204739
Alignment:
Q  95 ccaccaaaaagaattcatcattttctcgatttcatcac 132  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  204702 ccaccaaaaagaattcatcattttctcaatttcatcac 204739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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