View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_20 (Length: 427)
Name: NF6021_low_20
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 31277942 - 31278345
Alignment:
| Q |
14 |
atttttggatcacaacatcacctaaaatggttcccaattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacataactcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31277942 |
atttttggatcacaacatcacctaaaatggttcccaattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacataactcaa |
31278041 |
T |
|
| Q |
114 |
agaaggctccttgtagattttagagttggcttccaaatttctatctaatagctccataatgaaactcatctgcatcgagagaggggaagaggattgcact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31278042 |
agaaggctccttgtagattttagagttggcttccaaatttctatctaatagctccataatgaaactcatctgcatcgagagaggggaagaggattgcact |
31278141 |
T |
|
| Q |
214 |
ttatcatcaattttgggatattccttcaatgattgtccatagtcttcttcgaacacttgctccaatgtcttccgtgaccgacttgtagcactgagatagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31278142 |
ttatcatcaattttgggatattccttcaatgattgtccatagtcttcttcaaacacttgctccaatgtcttccgtgaccgacttgtagcactgagatagt |
31278241 |
T |
|
| Q |
314 |
tcatcacataatgggtgattgggtgaattccaccaccgggaaccgcttccaaattcaccagatcatggcatatcagattctccaactccatgaaaatgcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31278242 |
tcatcacataatgggtgattgggtgaattccaccaccgggaaccgcttccaaattcatcggatcatggcatatcagattctccaactccatgaaaatgcc |
31278341 |
T |
|
| Q |
414 |
tatg |
417 |
Q |
| |
|
|||| |
|
|
| T |
31278342 |
tatg |
31278345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 31276042 - 31275811
Alignment:
| Q |
49 |
aattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacataactcaaagaaggctccttgtagattttagagttggcttcca |
148 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||| | ||||| ||| |||||||| ||||| || || ||||| | |
|
|
| T |
31276042 |
aattcactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtccttgtaaattttggatttagcttcta |
31275943 |
T |
|
| Q |
149 |
aatttctatctaatagctccataatgaaactcatctgcatcgagagaggggaagaggattgcactttatcatcaattttgggatattccttcaatgattg |
248 |
Q |
| |
|
|||| || ||||||| ||||||||| || ||| |||| ||| | || ||||| || |||| ||||||| || || ||||| |||||||||| || |
|
|
| T |
31275942 |
aattgctctctaataactccataatccaatccatttgcaccgacaaagacgaagatgaatgcatcctatcatccatcttaggataatccttcaatggatg |
31275843 |
T |
|
| Q |
249 |
tccatagtcttcttcgaacacttgctccaatgtct |
283 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||| |
|
|
| T |
31275842 |
tccatag---tcttcaaacacttgctccaaagtct |
31275811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 356
Target Start/End: Complemental strand, 31286289 - 31286009
Alignment:
| Q |
77 |
tgtacctgcagttattcatcaagaaaacataactca-aagaaggctccttgtagattttagagttggcttccaaatttctatctaatagctccataatga |
175 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | | ||| ||| |||| ||||||||| || |||||||||||| | || ||||||||||||||||| | |
|
|
| T |
31286289 |
tgtacctgctgtaattcatctggaaaacatagcactgaagtagggtcctcgtagattttggatttggcttccaaactgctctctaatagctccataatca |
31286190 |
T |
|
| Q |
176 |
aactcatctgcatcgagagaggggaagaggattgcactttatcatcaattttgggatattccttcaatgattgtccatagtcttcttcgaacacttgctc |
275 |
Q |
| |
|
||| ||||| || || |||| ||||| ||| |||||| |||| |||||||| |||||||| ||||| | | ||||| |||||||| ||| || |||| |
|
|
| T |
31286189 |
aacccatcttcactgatagagaggaagtggaatgcactctatcctcaatttttggatattcgttcaacggatacccataatcttcttcaaactctcgctc |
31286090 |
T |
|
| Q |
276 |
caatgtcttccgtgaccgacttgtagcactgagatagttcatcacataatgggtgattgggtgaattccaccaccgggaac |
356 |
Q |
| |
|
|| |||||||||| ||| |||| || ||||||||||| |||||||| || ||||||| |||| || ||||||| |
|
|
| T |
31286089 |
cagcaccttccgtgactgacaatcagcatgaaggtagttcatcacgtaatgggtaatcgggtgaagtccaacagcgggaac |
31286009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University