View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_23 (Length: 419)
Name: NF6021_low_23
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 32632082 - 32631688
Alignment:
| Q |
16 |
aaataatcatatagttttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaatggtt |
115 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632082 |
aaataataatatagctttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaatggtt |
32631983 |
T |
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| Q |
116 |
acgtcttaatcataattcttgctatttataaggaaggccacttcatacatttcacagcatctctaaacaataagctataacatttttcatattttcttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631982 |
acgtcttaatcataattcttgctatttataaggaaggccacttcatacatttcacagcatctctaaacaataagctataacatttttcatattttcttga |
32631883 |
T |
|
| Q |
216 |
atacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaaggccttatgtgttaacagtggcacttcaatttgggtttgcaggagcatac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631882 |
atacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaaggccttatgtgttaacagtggcacttcaatttgggtttgcaggagcatac |
32631783 |
T |
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| Q |
316 |
atattctccatggccagtttcaacatgggaatgaatcgttttgtgttcattgtttatcgtaatgtcattgctgcaattgcccttgctccctttgc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631782 |
atattctccatggccagtttcaacatgggaatgaatcgttttgtgttcattgtttatcgtaatgtcattgctgcaattgcccttgctccctttgc |
32631688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 52960664 - 52960542
Alignment:
| Q |
16 |
aaataatcatatagttttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaatgg-t |
114 |
Q |
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||||||| |||| | |||||||||| || |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
52960664 |
aaataataatattgctttcatatctatt-gataaaaagcgaaaactttataagaggggactcttcaagatatacttatcattttcccatttctaatggat |
52960566 |
T |
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| Q |
115 |
tacgtcttaatcataattcttgct |
138 |
Q |
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||||||||||||| ||||| |||| |
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| T |
52960565 |
tacgtcttaatcaaaattcgtgct |
52960542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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