View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_24 (Length: 416)
Name: NF6021_low_24
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 35035636 - 35036042
Alignment:
| Q |
12 |
catcatccatttttacctactatagctggttagtttgatgcccttgagttttggtt------tattaaacattcaatcatttagagtggcaaagaatttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
35035636 |
catcatccatttttacctactatagctggttagtttgatgccctagagttttaatgagtatgtattaaacattcaatcatttagagtggcaaagaatttt |
35035735 |
T |
|
| Q |
106 |
tcatattagaataaaagtatatatgcgtcnnnnnnnn-ttaggatataatccctctcaaaaatatgcaattgtaatataaccatcccg-----------t |
193 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35035736 |
tcatattagaataaaagtatatatgcgtcaaaaaaaaattaggatataatccctctcaaaaatatgcaattgtaatataaccatcccgtgtaaaacccgt |
35035835 |
T |
|
| Q |
194 |
gtccagatattggttatactattagttatgcactgagtctgacttaaagaataaaagaacaagaccaagaataagtagtttttctaccaaataaaaataa |
293 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035836 |
gtccagttattggttatactattagttatgcactgagtctgacttaaagaataaaagaacaagaccaagaataagtagtttttctaccaaataaaaataa |
35035935 |
T |
|
| Q |
294 |
ataaatagttttggctttttcatatataacagattttgagtacnnnnnnnctcttcagaattgaataataaacatttacatatgtactatggatgcataa |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35035936 |
ataaatagttttggctttttcatatataacagattttgagtacttcttttctcttcagaattgaataataaacatttacatatgtactatgggtgcataa |
35036035 |
T |
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| Q |
394 |
tgcttct |
400 |
Q |
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||||||| |
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| T |
35036036 |
tgcttct |
35036042 |
T |
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