View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_27 (Length: 411)
Name: NF6021_low_27
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 35035659 - 35035242
Alignment:
| Q |
1 |
tatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccatacaaatta----ttataggaaaagacaa |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035659 |
tatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccatacaaattaattattataggaaaagacaa |
35035560 |
T |
|
| Q |
97 |
aagtctatacaaattattatnnnnnnnnnnnnnn-gacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattcttt |
195 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035559 |
aagtctatacaaattattataaaaataaataaaaagacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattcttt |
35035460 |
T |
|
| Q |
196 |
aaatacacac----tcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacac |
291 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035459 |
aaatacacacacactcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacac |
35035360 |
T |
|
| Q |
292 |
ttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaa |
391 |
Q |
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||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35035359 |
ttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaa |
35035260 |
T |
|
| Q |
392 |
attctatatttcatctct |
409 |
Q |
| |
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|||||||||||||||||| |
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| T |
35035259 |
attctatatttcatctct |
35035242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 34974660 - 34974520
Alignment:
| Q |
264 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
363 |
Q |
| |
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|||||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
|
| Q |
364 |
cctaagagcaaatccattatgtgttcaaattctatatttca |
404 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttca |
34974520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 34956119 - 34956057
Alignment:
| Q |
343 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcat |
405 |
Q |
| |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcat |
34956057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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