View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_29 (Length: 407)

Name: NF6021_low_29
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_29
NF6021_low_29
[»] chr7 (4 HSPs)
chr7 (20-396)||(10615601-10615977)
chr7 (64-229)||(10169009-10169174)
chr7 (64-229)||(10176534-10176699)
chr7 (140-266)||(7977881-7978004)
[»] chr3 (4 HSPs)
chr3 (20-395)||(13469442-13469817)
chr3 (127-265)||(51763316-51763451)
chr3 (127-256)||(51113132-51113258)
chr3 (132-190)||(1657527-1657585)
[»] chr6 (21 HSPs)
chr6 (27-396)||(6416987-6417356)
chr6 (127-355)||(7132300-7132528)
chr6 (132-355)||(7135228-7135451)
chr6 (132-266)||(7138151-7138285)
chr6 (127-256)||(6588202-6588331)
chr6 (132-325)||(7993412-7993605)
chr6 (134-197)||(6423907-6423970)
chr6 (136-196)||(19633104-19633164)
chr6 (129-196)||(6593923-6593990)
chr6 (133-196)||(14809700-14809763)
chr6 (133-185)||(6596238-6596290)
chr6 (134-196)||(6395539-6395601)
chr6 (136-189)||(6410699-6410752)
chr6 (131-196)||(28935337-28935402)
chr6 (134-174)||(6427183-6427223)
chr6 (140-188)||(6602725-6602773)
chr6 (148-196)||(10579090-10579138)
chr6 (127-166)||(8913442-8913481)
chr6 (145-226)||(9412137-9412215)
chr6 (300-377)||(6602539-6602616)
chr6 (136-196)||(14821388-14821448)
[»] chr4 (17 HSPs)
chr4 (55-374)||(21833091-21833410)
chr4 (132-238)||(553759-553865)
chr4 (123-272)||(1755544-1755690)
chr4 (132-196)||(3437612-3437676)
chr4 (134-236)||(661860-661962)
chr4 (127-179)||(7308546-7308598)
chr4 (127-236)||(8186311-8186420)
chr4 (127-182)||(55907681-55907736)
chr4 (127-173)||(1547718-1547764)
chr4 (158-265)||(53760219-53760323)
chr4 (161-229)||(532771-532839)
chr4 (132-179)||(571330-571377)
chr4 (60-103)||(641935-641978)
chr4 (127-161)||(1552536-1552570)
chr4 (52-110)||(2367986-2368044)
chr4 (60-110)||(12126576-12126626)
chr4 (133-238)||(1533703-1533808)
[»] chr1 (5 HSPs)
chr1 (64-238)||(7555130-7555304)
chr1 (64-196)||(19467423-19467555)
chr1 (60-179)||(9581618-9581737)
chr1 (60-196)||(9587189-9587325)
chr1 (134-196)||(33161200-33161262)
[»] chr8 (6 HSPs)
chr8 (127-238)||(17642885-17642996)
chr8 (132-238)||(17635606-17635712)
chr8 (133-188)||(32151969-32152024)
chr8 (51-206)||(18314620-18314775)
chr8 (132-229)||(14004143-14004240)
chr8 (132-229)||(5766564-5766661)
[»] scaffold1155 (1 HSPs)
scaffold1155 (149-256)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (149-256)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (149-256)||(30584-30688)
[»] chr5 (7 HSPs)
chr5 (134-186)||(41900496-41900548)
chr5 (64-196)||(29021729-29021861)
chr5 (132-191)||(28532813-28532872)
chr5 (132-164)||(32268535-32268567)
chr5 (134-196)||(41886599-41886661)
chr5 (132-173)||(20477455-20477496)
chr5 (129-166)||(28695545-28695582)
[»] chr2 (2 HSPs)
chr2 (127-182)||(1036617-1036672)
chr2 (134-196)||(45244840-45244902)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 10615601 - 10615977
Alignment:
Q  20 aaccaatggggtaaatgtagcaacattcggagtaactaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10615601 aaccaatggggtaaatgtagcaacattcggagtaactaatgtaaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaa 10615700  T
Q  120 gttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatatta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10615701 gttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatatta 10615800  T
Q  220 agtgatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10615801 agtgatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtga 10615900  T
Q  320 atcttttaaagaggcggcaaaggaaagggcgtgttggattgaggatagtgagtgagaaccggatccggttgatgatg 396  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  10615901 atcttttaaagaggaggcaaaggaaagggcgtgttggattgaagatagtgagtgagaaccggatccggttggtgatg 10615977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 10169174 - 10169009
Alignment:
Q  64 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 163  Q
    |||||||| || ||||| ||||||||||| ||||| ||||  ||| || |||| || | | | |||| ||||||||||||||||||||||||| |||| |    
T  10169174 agttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatat 10169075  T
Q  164 tttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtga 229  Q
    |||| |||||| |||| ||||||||||||||||  |||  ||||| ||||||||  ||||||||||    
T  10169074 tttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtga 10169009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 10176699 - 10176534
Alignment:
Q  64 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 163  Q
    |||||||| || ||||| ||||||||||| ||||| ||||  ||| || |||| || | | | |||| ||||||||||||||||||||||||| |||| |    
T  10176699 agttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatat 10176600  T
Q  164 tttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtga 229  Q
    |||| |||||| |||| ||||||||||||||||  |||  ||||| ||||||||  ||||||||||    
T  10176599 tttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtga 10176534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 7977881 - 7978004
Alignment:
Q  140 tgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatga 239  Q
    |||| ||||||||||||| ||| |||||||||||| || | |||||||  || ||||  || || |||||||| | ||| ||||| ||||| ||||   |    
T  7977881 tgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtgacgtgattttca---a 7977977  T
Q  240 tgggaaacgagagattttgcggagaag 266  Q
    |||||||| ||| |||| |||||||||    
T  7977978 tgggaaacaagaaatttggcggagaag 7978004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 13469817 - 13469442
Alignment:
Q  20 aaccaatggggtaaatgtagcaacattcggagtaactaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaa 119  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || || || ||||||||||||||||||||||| ||||| ||||||||    
T  13469817 aaccaatggggtaaatgtagcaacattcgcagtaactgatgtcaagttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaa 13469718  T
Q  120 gttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatatta 219  Q
     ||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||    
T  13469717 attagcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagatta 13469618  T
Q  220 agtgatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtga 319  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  13469617 agtgatgtgatgttcaatgatgagaagcgagagattttgcggagaagagcgtcaaggtccccatggaagcgtgtgaggttgagtgaattaaggtttgtga 13469518  T
Q  320 atcttttaaagaggcggcaaaggaaagggcgtgttggattgaggatagtgagtgagaaccggatccggttgatgat 395  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||| ||||| ||||    
T  13469517 atcttttaaagaggcgacaaaggaaagggtgtgttggattgaggatagtgagtgaggaacggatctggttggtgat 13469442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 51763451 - 51763316
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    |||||||||||||||||||| |||||||||||||||||||| || ||| |||| ||||||||||  ||||  ||  | || ||||| | |||||||||||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtgatg 51763352  T
Q  227 tgatgttcaatgatgggaaacgagagattttgcggagaa 265  Q
    |||  ||||   |||||||||||||||||||||| ||||    
T  51763351 tgagtttca---atgggaaacgagagattttgcgaagaa 51763316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 51113258 - 51113132
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    ||||| ||||||||||||||||||| ||||||||| ||||  ||||||||||| || ||||||| ||||| | ||  || |||||| ||||| ||||| |    
T  51113258 atgtgcgaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttgtgggaataatgcttttgttggagatattgagtgaag 51113159  T
Q  227 tgatgttcaatgatgggaaacgagagattt 256  Q
    | |  ||||   ||||||||||||||||||    
T  51113158 taagtttca---atgggaaacgagagattt 51113132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 1657527 - 1657585
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttg 190  Q
    |||||| ||||||||||| |||||| |||| ||||| ||||||||| | ||||||||||    
T  1657527 ggaacacgtgagagaggttaaagttttaatgttttgagagaaagcttgcaacccatttg 1657585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 27 - 396
Target Start/End: Original strand, 6416987 - 6417356
Alignment:
Q  27 ggggtaaatgtagcaacattcggagtaactaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcg 126  Q
    |||||||||||||||||| | ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| ||| ||    
T  6416987 ggggtaaatgtagcaacaattggagtaactgatgtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacg 6417086  T
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatg 6417186  T
Q  227 tgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatctttt 326  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  6417187 tgatgttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatctttt 6417286  T
Q  327 aaagaggcggcaaaggaaagggcgtgttggattgaggatagtgagtgagaaccggatccggttgatgatg 396  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| ||| || || |||||| |||||    
T  6417287 aaagaggcgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtgatg 6417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 355
Target Start/End: Original strand, 7132300 - 7132528
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    |||| |||||||  |||||| | |||||||||||| ||||||||||||||||| ||||||||||| ||||  ||| |||||||||| ||| |||| ||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatg 7132399  T
Q  227 tgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatctttt 326  Q
    |||  |||  |  ||||||| ||||||||||| |||||||   |||||||||||||| | ||  || |||||  ||||| || ||||| ||||| |||||    
T  7132400 tgagtttctttagtgggaaaggagagattttgtggagaagcatgtcaaggtcaccgttgtagtttgagaggtcaagggagttgaggttggtgaacctttt 7132499  T
Q  327 aaagaggcggcaaaggaaagggcgtgttg 355  Q
     | |||||| |  |||||||||| |||||    
T  7132500 gaggaggcgaccgaggaaagggcctgttg 7132528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 355
Target Start/End: Original strand, 7135228 - 7135451
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatg 231  Q
    |||||||  |||||| | |||||||||||| ||||||||||||||||| ||||||||||| ||||  ||| |||||||||| ||| |||| |||||||      
T  7135228 ggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagt 7135327  T
Q  232 ttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaaga 331  Q
    |||  |  ||||||| ||||||||||| |||||||   |||||||||| ||| | ||  || |||||  ||||| || ||||| ||||| ||||| | ||    
T  7135328 ttctttagtgggaaaggagagattttgtggagaagcatgtcaaggtcatcgttgtagtttgagaggtcaagggagttgaggttggtgaaccttttgagga 7135427  T
Q  332 ggcggcaaaggaaagggcgtgttg 355  Q
    |||| |  |||||||||| |||||    
T  7135428 ggcgaccgaggaaagggcctgttg 7135451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 7138151 - 7138285
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatg 231  Q
    |||||||  |||||| | |||||||||||| ||||||||||||||||| ||||||||||| ||||  ||| |||||||||| ||| |||| |||||||      
T  7138151 ggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagt 7138250  T
Q  232 ttcaatgatgggaaacgagagattttgcggagaag 266  Q
    |||  |  ||||||| |||||||||||||||||||    
T  7138251 ttctttagtgggaaatgagagattttgcggagaag 7138285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 6588331 - 6588202
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    ||||||||||| ||||||||||||||| ||||| | ||||| || | |||||| | ||||||| | |||||||||||||| | ||| | ||| ||||| |    
T  6588331 atgtgggaacaggtgagagaggtcaaaattgtattattttgagatatagctcgcagcccattttccggaacagtgggttgataggagagattgagtgaag 6588232  T
Q  227 tgatgttcaatgatgggaaacgagagattt 256  Q
    |||| ||||||| |||||||||||||||||    
T  6588231 tgattttcaatgttgggaaacgagagattt 6588202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 325
Target Start/End: Complemental strand, 7993605 - 7993412
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatg 231  Q
    ||||||| |||||||||||||| ||||||| |||||||  || ||||| || ||||  |||||||   ||  ||||| ||| |||||||| |||||||||    
T  7993605 ggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgatg 7993506  T
Q  232 ttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttt 325  Q
    |||||||||||||||  ||||||||  || ||||    |||||||||||  ||| ||   | |||||||||||| |||||||| ||||||||||    
T  7993505 ttcaatgatgggaaagtagagatttcccgcagaaacttgtcaaggtcacaatggtagttcgagaggttgagggagttaaggttagtgaatcttt 7993412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 6423907 - 6423970
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaac 197  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaac 6423970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 19633104 - 19633164
Alignment:
Q  136 caagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||||||||||||||||||||||  ||| |||||||||||| |||||||||| |||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaa 19633164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 6593990 - 6593923
Alignment:
Q  129 gtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||| |||| || ||||||| |||||    
T  6593990 gtgggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttgagggaa 6593923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 14809700 - 14809763
Alignment:
Q  133 gaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    |||||||||||||||| |||||||||||| |||||||||||| || | ||||| ||||||||||    
T  14809700 gaacaagtgagagaggccaaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaa 14809763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 6596290 - 6596238
Alignment:
Q  133 gaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaaccc 185  Q
    |||||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaaccc 6596238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 6395539 - 6395601
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||| |||||||||||||||||||||| |||||||||| |||| | ||||||| || |||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 6395601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  136 caagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccattt 189  Q
    ||||||| |||||||||||||||||| |||||||||||| || | |||||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 28935337 - 28935402
Alignment:
Q  131 gggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |||| |||||    
T  28935337 gggaacatgtgagtgaggttaaagttgtaatgttttgggagaaggctcgcaacccttttgtgggaa 28935402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 6427183 - 6427223
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaa 174  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaa 6427223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 6602773 - 6602725
Alignment:
Q  140 tgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatt 188  Q
    |||||||||||||||| ||||||||||| ||||||||| | ||||||||    
T  6602773 tgagagaggtcaaagtagtaatcttttgagagaaagcttgcaacccatt 6602725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 10579138 - 10579090
Alignment:
Q  148 gtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||||||| || ||||||||||||||||||||||||| || |||||    
T  10579138 gtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 8913481 - 8913442
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatctttt 166  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatctttt 8913442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 9412137 - 9412215
Alignment:
Q  145 gaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||   |||||||  ||| | |||||||| | |||||||||||    
T  9412137 gaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatg 9412215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 6602616 - 6602539
Alignment:
Q  300 gagggaattaaggtttgtgaatcttttaaagaggcggcaaaggaaagggcgtgttggattgaggatagtgagtgagaa 377  Q
    ||||||||| |||| |||||| ||||||||||||||   ||| |||||||||||| |||  | |||||| ||||||||    
T  6602616 gagggaattgaggtatgtgaaccttttaaagaggcgatcaagaaaagggcgtgtttgatccaagatagtaagtgagaa 6602539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 14821388 - 14821448
Alignment:
Q  136 caagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    |||||||||||||||||||||||||  ||  | |||||||  || ||||||||||||||||    
T  14821388 caagtgagagaggtcaaagttgtaacgttacgtgagaaagtccgcaacccatttgcgggaa 14821448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 55 - 374
Target Start/End: Complemental strand, 21833410 - 21833091
Alignment:
Q  55 ctaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaag 154  Q
    |||| ||| ||||||||| | || |||||||||||  | || |||||||| ||| |  ||||||| ||||| || | |||||||||||||||||||||||    
T  21833410 ctaacgtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaag 21833311  T
Q  155 ttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagat 254  Q
    | ||||| ||||| |  ||| |||| ||||||| ||||||||  ||||||| |||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  21833310 tagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagat 21833211  T
Q  255 tttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggcggcaaaggaaagggcgtgtt 354  Q
    ||  ||||||||   ||  ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||| |||||| | |  | || ||||||||||    
T  21833210 ttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacggatgagagggcgtgtt 21833111  T
Q  355 ggattgaggatagtgagtga 374  Q
    |||||||||| ||| |||||    
T  21833110 ggattgaggacagtcagtga 21833091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 553759 - 553865
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatg 231  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||  | ||| | ||  |||||||||| |    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg 553858  T
Q  232 ttcaatg 238  Q
    |||||||    
T  553859 ttcaatg 553865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 1755544 - 1755690
Alignment:
Q  123 agcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagt 222  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| | ||||| || | |||||  | | |||||||||| | |||||      
T  1755544 agcgatgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaac 1755643  T
Q  223 gatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtc 272  Q
    ||||| |  ||||   |||||||||||||||||| || |||||| |||||    
T  1755644 gatgtaagtttca---atgggaaacgagagatttggcagagaagtgcgtc 1755690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 3437676 - 3437612
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||    
T  3437676 ggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctcttaactgatttgtgggaa 3437612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 661860 - 661962
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgtt 233  Q
    ||||| |||||||||| ||||||||||| | ||||||||||||||| || ||||| |||||||  |||| ||||||||| | ||| ||||| ||||| ||    
T  661860 aacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgatttt 661959  T
Q  234 caa 236  Q
    |||    
T  661960 caa 661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 7308546 - 7308598
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcg 179  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  7308546 atgtgggaacaagtgagacaggtcaaagttgtaatcttctgggacaaagctcg 7308598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 8186420 - 8186311
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    |||| |||||| ||||| ||||||||||||||||| ||| |||||| | |||| || |||||||| ||||  ||||||| ||| || | ||| |||||||    
T  8186420 atgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatg 8186321  T
Q  227 tgatgttcaa 236  Q
    ||| ||||||    
T  8186320 tgaggttcaa 8186311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 55907736 - 55907681
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 182  Q
    |||| ||||||| |||||||  ||||||||||||| ||||||||||||||||||||    
T  55907736 atgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaa 55907681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 1547764 - 1547718
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaa 173  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  1547764 atgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 1547718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 53760323 - 53760219
Alignment:
Q  158 taatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagatttt 257  Q
    |||| |||||| |||||||||| |||||||||||  | | ||||| ||||||||| | ||| ||||||||||  ||||   ||||||||||||||||| |    
T  53760323 taatgttttggaagaaagctcgcaacccatttgcatggatagtggattggttggagagattgagtgatgtgagtttca---atgggaaacgagagattct 53760227  T
Q  258 gcggagaa 265  Q
    ||| ||||    
T  53760226 gcgaagaa 53760219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 532771 - 532839
Alignment:
Q  161 tcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtga 229  Q
    |||||| |||||| ||||||||||||||||||||||  ||| ||||||| || | ||| ||||||||||    
T  532771 tctttttggagaaggctcgtaacccatttgcgggaatggtgtgttggttagagagattgagtgatgtga 532839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 571330 - 571377
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcg 179  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 641935 - 641978
Alignment:
Q  60 gtcaagttcttcgagtaaagggaaacattctgcaataaggaaca 103  Q
    ||||||||||||||||||||||||||| |  |||||||||||||    
T  641935 gtcaagttcttcgagtaaagggaaacaattggcaataaggaaca 641978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 1552570 - 1552536
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaat 161  Q
    ||||||||||| |||||||||||||||||||||||    
T  1552570 atgtgggaacacgtgagagaggtcaaagttgtaat 1552536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 2368044 - 2367986
Alignment:
Q  52 taactaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcact 110  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||| | ||| ||||||||    
T  2368044 taactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcact 2367986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 12126576 - 12126626
Alignment:
Q  60 gtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcact 110  Q
    |||||||||||| ||||||||| |||| |||||||||| ||| ||||||||    
T  12126576 gtcaagttcttctagtaaagggcaacaatctgcaataaagaagagatcact 12126626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 1533808 - 1533703
Alignment:
Q  133 gaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgt 232  Q
    ||||| || |||||||| ||||||||||| ||||||||||||  ||| || || || |||||||  ||||||||||  || | || ||| |||||||| |    
T  1533808 gaacatgttagagaggttaaagttgtaattttttgggagaaatatcgcaagcctttagcgggaatcgtgggttggtcagataaatcaagggatgtgattt 1533709  T
Q  233 tcaatg 238  Q
    ||||||    
T  1533708 tcaatg 1533703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 7555130 - 7555304
Alignment:
Q  64 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 163  Q
    ||||||||||| |||||||||||||| ||||| || ||||  ||| | |||||||    | | || | |||||||||||| ||||| ||||||||||| |    
T  7555130 agttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatat 7555229  T
Q  164 tttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatg 238  Q
    |||||||||||||||| || ||| |||| || |  ||||||||||||||||||| ||||||||| | ||||||||    
T  7555230 tttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatatcaagtgatgttaggttcaatg 7555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 19467555 - 19467423
Alignment:
Q  64 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 163  Q
    ||||||||||| ||||| |||||||| || || |||||||| ||| |  ||||||| |  || |||| | |||||||||||||||||||||||||||| |    
T  19467555 agttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttgtaatat 19467456  T
Q  164 tttgggagaaagctcgtaacccatttgcgggaa 196  Q
    |||| | |||| |||| ||||||||||||||||    
T  19467455 tttgagtgaaaactcgcaacccatttgcgggaa 19467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 9581618 - 9581737
Alignment:
Q  60 gtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgta 159  Q
    |||||||  ||| |||||||| |||||||| ||||| |||||||  ||| ||||||||||  ||  |||||  |||||| ||||||| ||||| ||||||    
T  9581618 gtcaagtatttcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttgta 9581717  T
Q  160 atcttttgggagaaagctcg 179  Q
    ||||||  ||||||||||||    
T  9581718 atctttacggagaaagctcg 9581737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 9587189 - 9587325
Alignment:
Q  60 gtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgta 159  Q
    |||||||  ||| ||||||||||||||||  ||||| |||||||  ||| ||||||||||   |  |||||  |||||| ||||||| ||||| ||||||    
T  9587189 gtcaagtatttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgttgta 9587288  T
Q  160 atcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||  |||||||||  | |||||| |||||||||    
T  9587289 atctttaaggagaaagcatgcaacccaattgcgggaa 9587325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 33161200 - 33161262
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||||||||||| ||||||||| ||||  |||||||||||| ||| || ||||| |||||||    
T  33161200 aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcgggaa 33161262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 17642996 - 17642885
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatg 226  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| | |||||  ||| | |||||||| | ||| |||||||    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  227 tgatgttcaatg 238  Q
    |||  |||||||    
T  17642896 tgagtttcaatg 17642885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 17635712 - 17635606
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatg 231  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| |  ||||  ||| |||||||||| | ||| |||||| |||      
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  232 ttcaatg 238  Q
    |||||||    
T  17635612 ttcaatg 17635606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 32151969 - 32152024
Alignment:
Q  133 gaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatt 188  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagcttgtatcccatt 32152024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 18314775 - 18314620
Alignment:
Q  51 gtaactaatgtcaagttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattga-agttagcgatgtgggaacaagtgagagaggt 149  Q
    |||||||| ||| ||||||||||| ||||||||||| || ||||| ||||| |||||| | | || || || | |  ||||  ||||| | ||| |||||    
T  18314775 gtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattga-atgtaagaacatgagagtgaggt 18314677  T
Q  150 caaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttg 206  Q
    |||||||||||| ||||| |||||| ||||||| |||||||||||||  ||||||||    
T  18314676 caaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggttg 18314620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 14004143 - 14004240
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtga 229  Q
    ||||||| | || ||||||||||||||||| || || ||||||||||| || ||||| || ||||   ||||||||||||||| ||| || |||||||    
T  14004143 ggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtga 14004240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 5766661 - 5766564
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtga 229  Q
    ||||||| | || ||||||||||||||||| || || ||||||||||| || ||||| || ||||   || |||||||||||| ||| || |||||||    
T  5766661 ggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtga 5766564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  149 tcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacg 248  Q
    ||||||||||||| |||||||| ||| |||| ||||||| ||||||||   ||||||||| ||| | ||| |||||||||| |||||   ||||||||||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacg 1829  T
Q  249 agagattt 256  Q
    ||||||||    
T  1828 agagattt 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  149 tcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacg 248  Q
    ||||||||||||| |||||||| ||| |||| ||||||| ||||||||   ||||||||| ||| | ||| |||||||||| |||||   ||||||||||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacg 8387  T
Q  249 agagattt 256  Q
    ||||||||    
T  8388 agagattt 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  149 tcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaacagtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacg 248  Q
    ||||||||||||| |||||||| ||| |||| ||||||| ||||||||   ||||||||| ||| | ||| |||||||||| |||||   ||||||||||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacg 30592  T
Q  249 agagattt 256  Q
    ||||||||    
T  30591 agagattt 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 41900548 - 41900496
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaaccca 186  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 29021729 - 29021861
Alignment:
Q  64 agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct 163  Q
    ||||||||||| |||||||| || || |||||||| || |||| | | ||||||| | |  | | |||| |||||||||||||||||||||| ||||| |    
T  29021729 agttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgt 29021828  T
Q  164 tttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||| |  ||||||||| || |||| ||||||||    
T  29021829 ttttgctgaaagctcgcaaaccatctgcgggaa 29021861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 28532813 - 28532872
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 191  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  28532813 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 28532872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 32268535 - 32268567
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatctt 164  Q
    |||||||||||||||||||||||||||||||||    
T  32268535 ggaacaagtgagagaggtcaaagttgtaatctt 32268567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 41886661 - 41886599
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||| |||||||||| |||||||||||||||| ||  ||| |||| |||||||||| |||||    
T  41886661 aacaaatgagagaggttaaagttgtaatctttttggcaaaaactcgcaacccatttgtgggaa 41886599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
Q  132 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaa 173  Q
    ||||||| ||||||||||||||||| |||| |||||||||||    
T  20477496 ggaacaactgagagaggtcaaagttttaatattttgggagaa 20477455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 28695582 - 28695545
Alignment:
Q  129 gtgggaacaagtgagagaggtcaaagttgtaatctttt 166  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  28695582 gtgggaacaagtgagagaggtcatagttgtaatgtttt 28695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 1036672 - 1036617
Alignment:
Q  127 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 182  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 1036617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 45244902 - 45244840
Alignment:
Q  134 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 196  Q
    ||||| |||||||||||||| || ||||  |||||||||||||| | |||||||| |||||||    
T  45244902 aacaaatgagagaggtcaaatttctaatagtttgggagaaagcttgcaacccattcgcgggaa 45244840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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