View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_34 (Length: 395)
Name: NF6021_low_34
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 1837173 - 1836808
Alignment:
| Q |
20 |
ccactgttgttatctggtggcgccaacatgttgg------ctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgctta |
113 |
Q |
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| T |
1837173 |
ccactgttgttatctagtggcgccaacatgttggtgttggctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgctta |
1837074 |
T |
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| Q |
114 |
gaggacgaggaagagtgtttgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837073 |
gaggacgaggaagagtgtttgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctc |
1836974 |
T |
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| Q |
214 |
tggtgtctcgaaacttcctaaccagattcttgttttggtgccgggctcacgaatttcggaaacccatttaccccattttctcttacggactcctctgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836973 |
tggtgtctcgaaacttcctaaccagattcttgttttggtgccgggctcgcgaatttcggaaacccatttaccccattttctcttacggactcctctgtat |
1836874 |
T |
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| Q |
314 |
gcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836873 |
gcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatat |
1836808 |
T |
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