View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_35 (Length: 375)
Name: NF6021_low_35
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 252733 - 252630
Alignment:
| Q |
149 |
taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacatatcaaatatttgaaccctataatgtagcaaacttgcataatacaaa |
248 |
Q |
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| T |
252733 |
taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacagatcaaatatttgacccctataatgtagcaaacttgcataatacaga |
252634 |
T |
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| Q |
249 |
tcaa |
252 |
Q |
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|||| |
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| T |
252633 |
tcaa |
252630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 252802 - 252727
Alignment:
| Q |
45 |
gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta |
120 |
Q |
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| T |
252802 |
gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta |
252727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 234405 - 234470
Alignment:
| Q |
246 |
aaatcaagtaaataatgagtttgaataatcaa--atagaaattataactcttcaatatatcaaacat |
310 |
Q |
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| T |
234405 |
aaatcaag-aaataatgagtttgaataatcaactatagaaattataactcgtcaatatatcgaacat |
234470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 252371 - 252329
Alignment:
| Q |
279 |
tagaaattataactcttcaatatatcaaacataaaatcaacta |
321 |
Q |
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| T |
252371 |
tagaaattataactcttcaatatttcaaacatcaaatcaacta |
252329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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