View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_36 (Length: 375)
Name: NF6021_low_36
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 138 - 358
Target Start/End: Original strand, 25151117 - 25151337
Alignment:
| Q |
138 |
ctaaaatagcatgcactcaccaagatctgatatgtttcaaaatgcannnnnnngttaattgatccaagcaaggtttgaatcaattcacaacattaactgt |
237 |
Q |
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| T |
25151117 |
ctaaaatagcatgcactcaccaagatctgatatgtttcaaaatgcatttttttgttaattgatccaagcaaggtttgaatcaattcacaacattaaatgt |
25151216 |
T |
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| Q |
238 |
tgtattgactaattttttacataattttatttggacaacggctttgttagttttgagaaaaaataatttgtggtgttattttgtgttgtttatcctaatg |
337 |
Q |
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| T |
25151217 |
tgtattgactaattttttacataattttatttggacaacgactttgttagttttgagaaaaaataatttgtggtgttattttgtgttgtttatcctaatg |
25151316 |
T |
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| Q |
338 |
tttcttagatttatagtaatt |
358 |
Q |
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| T |
25151317 |
tttcttagatttatagtaatt |
25151337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 145 - 351
Target Start/End: Complemental strand, 25168276 - 25168070
Alignment:
| Q |
145 |
agcatgcactcaccaagatctgatatgtttcaaaatgcannnnnnngttaattgatccaagcaaggtttgaatcaattcacaacattaactgttgtattg |
244 |
Q |
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| T |
25168276 |
agcatgcactcaccaaaatctcatatgtttctaaatgcatttctttgttaattaattcaaacaagttgtgaatcaattcacaacatcaaatattgtatta |
25168177 |
T |
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| Q |
245 |
actaattttttacataattttatttggacaacggctttgttagttttgagaaaaaataatttgtggtgttattttgtgttgtttatcctaatgtttctta |
344 |
Q |
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| T |
25168176 |
actaatttctaacaaaattttatttgaacaacaactttgttagttttgagaaaaattaatttgcagtgttattttgggttgtttgacctaatgtttctta |
25168077 |
T |
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| Q |
345 |
gatttat |
351 |
Q |
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||||||| |
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| T |
25168076 |
gatttat |
25168070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 25150988 - 25151062
Alignment:
| Q |
10 |
ttatgattgaaatccatcacgtttaactcatgggaatgagagaaaatcaatgtgtgattatttgataatcaaaaa |
84 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25150988 |
ttatgattgaaatccatcacgtttaacttatgggaatgagagaaaatcaatgtgtgattatttgataatcaaaaa |
25151062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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