View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_41 (Length: 368)
Name: NF6021_low_41
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_41 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 16975726 - 16975550
Alignment:
| Q |
192 |
acctgttcttctagtgagtcggttcattagcccaggacatttataaatatgcaatttcttcaagtttaagtgtcgttgaaaatgagctggtaatgaagtt |
291 |
Q |
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| T |
16975726 |
acctgttcttctagtgagtcggttcattagcccaggacatttataaatatgcaatttcttcaagtttaagtgtcgttgaaaatgagctggtaatgaagtt |
16975627 |
T |
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| Q |
292 |
aactcaggaaaatctgaaatttctaatgtgtgaagagatgtcatggcccttaacaagtctggcagggatgcaagaga |
368 |
Q |
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| T |
16975626 |
aactcaggaaaatctgaaatttctaatgtgtgaagagatgtcatggcccttaacaagtctggcagggatgcaagaga |
16975550 |
T |
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Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 16976048 - 16975865
Alignment:
| Q |
1 |
cgaaccaaatgaaaaaacactcaataagaaaagagcaaaatactcacactaataaactaaattgaaacgaacaacaaaaatgcaataaatcatatacttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
16976048 |
cgaaccaaatgaaaaaacactcaataagaaaagagcaaaatactcacactaataaactaaattgaaacgaacaacaaatatccaataaatcatatacttg |
16975949 |
T |
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| Q |
101 |
ctcttcagtcttcacgcatagctaatcaaactccat-ttagattcctcctcttaatcgttaatactcctcgatatagctaatga |
183 |
Q |
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| T |
16975948 |
ctcttcagtcttcacgcatagctaatcaaactccatgttagattcctcgtcttaatcgttaatactcctcgatatagctaatga |
16975865 |
T |
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