View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_42 (Length: 367)
Name: NF6021_low_42
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 101 - 348
Target Start/End: Original strand, 1180543 - 1180790
Alignment:
| Q |
101 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaatttatattatccatttgctacataatcagatctataatccatttccttttctt |
200 |
Q |
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| T |
1180543 |
acccttaccttctacatcaactatggatggcaacatcaaaattaaaacttatattatccatttgctacataatcagatctataatccatttccttttctt |
1180642 |
T |
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| Q |
201 |
tgatacatggcaggtatcataatcatatctatatatcaaagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaacaacatcacaa |
300 |
Q |
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| T |
1180643 |
tgatacatggcaggtatcataatcatatctatatatcaaagagtgaattgatttttttttaaaatagccaaaatttattccaatagcaaaaacatcacaa |
1180742 |
T |
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| Q |
301 |
gctgagatgttgtgcttggcaaaagccacaagtacacaagaacagaag |
348 |
Q |
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| T |
1180743 |
gctgagatgttgtgcttggcaaaagccacaagtacacaggaacagaag |
1180790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1180435 - 1180513
Alignment:
| Q |
1 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttctac |
79 |
Q |
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| T |
1180435 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaactttcgaagaaagacgagagaagttctac |
1180513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 139 - 348
Target Start/End: Original strand, 1156403 - 1156612
Alignment:
| Q |
139 |
aaattaaaatttatattatccatttgctacataatcagatctataatccatttccttttctttgatacatggcaggtatcataatcatatctatatatca |
238 |
Q |
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| T |
1156403 |
aaattaaaacttatattattcatttgctacataatcagatctataatccatttccttttctttgatacatggcaagtatcataatcatatctatatatca |
1156502 |
T |
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| Q |
239 |
aagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaacaacatcacaagctgagatgttgtgcttggcaaaagccacaagtacaca |
338 |
Q |
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| T |
1156503 |
aagagtgaattgaactttttttaaaatagccaaaatttattccaatagcaaaaacatcacaagctgagatgttgtgcttggcaaaagccacaagtacaca |
1156602 |
T |
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| Q |
339 |
agaacagaag |
348 |
Q |
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| T |
1156603 |
ggaacagaag |
1156612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1155815 - 1155892
Alignment:
| Q |
1 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttcta |
78 |
Q |
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| T |
1155815 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacttgcgaagaaagacgagagaagttcta |
1155892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 1155917 - 1155963
Alignment:
| Q |
101 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaa |
147 |
Q |
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| T |
1155917 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaa |
1155963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 50365612 - 50365690
Alignment:
| Q |
1 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttctac |
79 |
Q |
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| T |
50365612 |
gagagaggcttatttggtgtgggtcccacgctttttatcttctctccaaaattgagaagaaagacgagagaagctctac |
50365690 |
T |
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