View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_43 (Length: 366)
Name: NF6021_low_43
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 16975052 - 16975401
Alignment:
| Q |
1 |
tctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctc |
100 |
Q |
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| T |
16975052 |
tctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctc |
16975151 |
T |
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| Q |
101 |
ttagatccctggaaaaactatacatatcatgtcttggtaagcttgagtctattccagaccatgcattgcatggtttgaattctcttaaagttttgagatt |
200 |
Q |
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| T |
16975152 |
ttagatccctggaaaaactatacatctcatgttttggtaagcttgagtctattcctgaccatgcattgcatggtttgaattctcttcaagttttgagatt |
16975251 |
T |
|
| Q |
201 |
tgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaa |
300 |
Q |
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| T |
16975252 |
tgcattttggaaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaa |
16975351 |
T |
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| Q |
301 |
cctactgtgaatatgttaacctcccttcgcaaagtgaaaatcttcagtga |
350 |
Q |
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| T |
16975352 |
cctactatgaatatgttaacttcccttcgcaaagtgaaaatcttcagtga |
16975401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 16917071 - 16917390
Alignment:
| Q |
9 |
gagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatcc |
108 |
Q |
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| T |
16917071 |
gagagatattgcaggtaagatgcctaacctcacagaacttatgattgaaggctttcatcaaatcacggtactacctaatgaactcagatctctcagttcc |
16917170 |
T |
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| Q |
109 |
ctggaaaaactatacatatcatgtcttggtaagcttgagtctattccagaccatgcattgcatggtttgaattctcttaaagttttgagatttgcatttt |
208 |
Q |
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| T |
16917171 |
ctacagaaactctacatttcatgttgtggtaatcttgagtccattcctaac-----atgtc----ttcgagttctcttcaagttttgggctttgcacttt |
16917261 |
T |
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| Q |
209 |
ggaaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactgt |
308 |
Q |
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| T |
16917262 |
gcaatagcttaaaatccttgccccaaagtacgacagccctaactagtcttcagagacttcaaatacattattgtcccaaactcattttaccagctaatat |
16917361 |
T |
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| Q |
309 |
gaatatgttaacctcccttcgcaaagtga |
337 |
Q |
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| T |
16917362 |
gaacatgttaacttcccttcgtaaagtga |
16917390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 16842166 - 16842073
Alignment:
| Q |
17 |
ttgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccct |
110 |
Q |
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| T |
16842166 |
ttgcagctagtatgaataatctcgaggaacttttcattgaaaattttgatgaactcaaggtactacctaatgaactcaactctctcagttccct |
16842073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 16837057 - 16836725
Alignment:
| Q |
15 |
aattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatccctggaa |
114 |
Q |
| |
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|||||||| |||| || |||| ||| | |||||| | ||| |||| ||||||||||| |||||||||||||||||||||||||||| || ||||| || |
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| T |
16837057 |
aattgcagctagtttgaataatctcgaggaacttttcattcaaaagtttgatgaactcaaggtactacctaatgaactcaactctctcagttccctacaa |
16836958 |
T |
|
| Q |
115 |
aaactatacatatcatgtcttggtaagcttgagtctattccagaccatgcattgcatggtttgaattctcttaaagttttgagatttgcattttggaaaa |
214 |
Q |
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||||||| || |||| | | |||||||||||| | || | || | | || ||||||| ||||||| ||||||| ||| | | ||| |||| |
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| T |
16836957 |
aaactattaatttcattttgtccaaagcttgagtctgtcccccagtgtgtacttcaaggtttgagttctcttcgagttttgtcttttacgtattgcaaaa |
16836858 |
T |
|
| Q |
215 |
gcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactgtgaatat |
314 |
Q |
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|||||||||||||||| ||||| | ||||||| ||||| ||| |||| ||||||||| | ||||| |||||||| |||||| | ||| | |||| || |
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| T |
16836857 |
gcttaatatccttgccccaaagtacgacaaacctaacttgtctcgagactcttcaaatcgcctattgccccaatctcgttttaccagctaatatgaacat |
16836758 |
T |
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| Q |
315 |
gttaacctcccttcgcaaagtgaaaatcttcag |
347 |
Q |
| |
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| ||| |||||||| |||||| |||| |||| |
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| T |
16836757 |
gctaagttcccttcgtgaagtgagaatcatcag |
16836725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 16911876 - 16911993
Alignment:
| Q |
9 |
gagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggtactacctaatgaactcaactctcttagatcc |
108 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||||||||||||| |||| || |||| |||||||||||||||||||| |||||| | ||| |
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| T |
16911876 |
gagagatattgcaggtaagatgcctaacctcaaagaacttatgattgacgcctttcatcaactcacggtactacctaatgaactcagctctctccgttcc |
16911975 |
T |
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| Q |
109 |
ctggaaaaactatacata |
126 |
Q |
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|| ||| ||||||||||| |
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| T |
16911976 |
ctagaagaactatacata |
16911993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 16841972 - 16841838
Alignment:
| Q |
211 |
aaaagcttaatatccttgccgcaaagcatgacaaacgtaactactcttgagaaacttcaaatcacttattgtcccaatctgattttacaacctactgtga |
310 |
Q |
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|||||||||||||||||||| ||||| | || |||| ||||| ||| |||| ||||||||| | ||||| |||||||| |||||| | ||| | ||| |
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| T |
16841972 |
aaaagcttaatatccttgccccaaagtacgataaacctaacttgtctcgagactcttcaaatcgcctattgccccaatctcgttttaccagctaatatga |
16841873 |
T |
|
| Q |
311 |
atatgttaacctcccttcgcaaagtgaaaatcttc |
345 |
Q |
| |
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| ||| ||| |||||||| |||||| ||||||| |
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| T |
16841872 |
acatgctaagttcccttcgtgaagtgagaatcttc |
16841838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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