View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_44 (Length: 363)
Name: NF6021_low_44
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_44 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 351
Target Start/End: Original strand, 30041513 - 30041858
Alignment:
| Q |
5 |
cagttaggcaactatgggttacctccatgtcgtcaaaaattgttttggatggaaattgttgcaagaaaggctcccaacccggggcaaattacggagaaga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30041513 |
cagttaggcaactatgggttacctccatgtcgtcaaaaattgctttggatggaaattattgcaagaaaggctcccaacccggggcaaattacggagaaga |
30041612 |
T |
|
| Q |
105 |
gtagtcattcgggatattcatcaacaaagctgtgtatttttctttgaaggcatagaatcagcaagtcatttatttgtaaattgcgcaaaaactcaagatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
30041613 |
gtagtcattcgggatattcatcaacaaagctgtgtattttgctttgaaggcatagaatcagcaagtcatttatttgtaaattgcgcgaaaactcaaga-t |
30041711 |
T |
|
| Q |
205 |
tgggagctaattctcaattctctgaattggaaaccagataattggagttatgagatagtagataatttgttattggtcaatttggtttgcaaggaaagaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30041712 |
tgggagctaattctcaattctctgaattggaaaccagataattggagttatgagatagtagataatttgttattggtcaatttggtttgcaaggaaagaa |
30041811 |
T |
|
| Q |
305 |
gggtcgggaggggtcacatttaatttggctaacgaggctaggtgtat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30041812 |
gggtcgggaggggtcacatttaatttggctaacgaggctaggtgtat |
30041858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 272
Target Start/End: Original strand, 5619 - 5844
Alignment:
| Q |
47 |
ttttggatggaaattgttgcaagaaaggctcccaacccggggcaaattacggagaagagtagtcattcgggatattcatcaacaaagctgtgtatttttc |
146 |
Q |
| |
|
|||||||| ||||||| |||||||||| || |||||||||| | ||||| ||| |||| || ||||| |||||||||| ||| ||| |||| ||| | |
|
|
| T |
5619 |
ttttggatagaaattgctgcaagaaagacttccaacccgggtcgaattatggatgagagaagccattcaggatattcatgaacgaagttgtgaattctgt |
5718 |
T |
|
| Q |
147 |
tttgaaggcatagaatcagcaagtcatttatttgtaaattgcgcaaaaactcaagatttgggagctaattctcaattctctgaattggaaaccagataat |
246 |
Q |
| |
|
|| || ||||||||||| | ||| ||||||| ||||||| | |||||| ||||||||||| ||||||||||||| | ||||||||| || || |
|
|
| T |
5719 |
ttggacggcatagaatcgatacgtcctttatttataaattgtgtaaaaacagaagatttgggatctaattctcaattggttaaattggaaatcaaatgga |
5818 |
T |
|
| Q |
247 |
tggagttatgagatagtagataattt |
272 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
5819 |
tggagttcagagatagtagataattt |
5844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 8590006 - 8590096
Alignment:
| Q |
249 |
gagttatgagatagtagataatttgttattggtcaatttggtttgc-aaggaaagaaggg-tcgggaggggtcacatttaatttggctaac |
337 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| | |||| ||||||||||||| | || ||| ||||||||||||||| ||||| |
|
|
| T |
8590006 |
gagttatgagataatagataatttgttattgttcaattcgaattgcaaaggaaagaagggtttggaaggtgtcacatttaatttgcctaac |
8590096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 26619060 - 26619007
Alignment:
| Q |
252 |
ttatgagatagtagataatttgttattggtcaatttggtttgc-aaggaaagaa |
304 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
|
|
| T |
26619060 |
ttatgagatagtagataattttctattgttcaatttgttttgcaaaggaaagaa |
26619007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University