View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_47 (Length: 351)
Name: NF6021_low_47
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 52085642 - 52085309
Alignment:
| Q |
1 |
tgggaacatgtcatgaaatttctcaaccaccgcagtttggagtctctttccatcgtctccaaaaagttcctttccatcaccaacagttgtcgaccatctt |
100 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52085642 |
tgggaatatgtcatcaaatttctcaaccaccgcagtttggagtctctttccatcgtctccaaaaagttcctttccatcaccaaccgttgtcgaccatctt |
52085543 |
T |
|
| Q |
101 |
tcaaaatatgtgatccaaccatccctttcctccctagccttttccacagatttaccaacctcacatccctcgacctaacgtgtttccacggtgaccttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
52085542 |
tcaaaatatgtgatccaaccatccctttcctccctagccttttccacagatttaccaacctcatatccctcgacctaacgtgtttccacagtgaccttga |
52085443 |
T |
|
| Q |
201 |
cacgcttctccgccaaatatctttttcctctatgcacctcaaatctcttgatgtctccaatcactacctccctaaagatggctttcaaagtttagcagca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
52085442 |
cacgcttctccgccaaatatctttttcctctatgcacctcaaatcgcttgatgtctccaatcactacatccctaaagatgggtttcaaagtttagcagca |
52085343 |
T |
|
| Q |
301 |
aagatccaaactttcccctctcccacttgttcta |
334 |
Q |
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||||| ||||||| |||||| ||||||||||| |
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| T |
52085342 |
aagatgaaaactttgacctctctcacttgttcta |
52085309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 52094384 - 52094231
Alignment:
| Q |
96 |
atctttcaaaatatgtgatccaaccatccctttcctccctagccttttccacagatttaccaacctcacatccctcgacctaacgtgtttccacggtgac |
195 |
Q |
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| T |
52094384 |
atctttcaaaatatgtgatccaaccatccctttcctctctagccttttccacagatttaccaacctcacatctctcgacctaacgtgcttccacggtgac |
52094285 |
T |
|
| Q |
196 |
cttgacacgcttctc----cgccaaatatctttttcctctatgcacctcaaatc |
245 |
Q |
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| T |
52094284 |
cttgacacactcctcagctagccaaatatctttttccaccatgcacctcaaatc |
52094231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 52094234 - 52094159
Alignment:
| Q |
259 |
aatcactacctccctaaagatggctttcaaagtttagcagcaaagatccaaactttcccctctcccacttgttcta |
334 |
Q |
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| T |
52094234 |
aatcactacatccctatagatgggtttcaaagtttagctgcaaagatgaaaactttgacctctctcatttgttcta |
52094159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52094434 - 52094402
Alignment:
| Q |
1 |
tgggaacatgtcatgaaatttctcaaccaccgc |
33 |
Q |
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| T |
52094434 |
tgggaacatgtcatcaaatttctcaaccaccgc |
52094402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 17626935 - 17626994
Alignment:
| Q |
26 |
accaccgcagtttggagtctctttccatcgtctccaaaaagttcctttccatcaccaaca |
85 |
Q |
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| T |
17626935 |
accaccgtagtttggagtctctctccctagtctccaaacacttcctttccatcaccaaca |
17626994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 2381376 - 2381422
Alignment:
| Q |
41 |
agtctctttccatcgtctccaaaaagttcctttccatcaccaacagt |
87 |
Q |
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| T |
2381376 |
agtctctttccatcgtctccaaacagttactctcgatcaccaacagt |
2381422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 15091356 - 15091400
Alignment:
| Q |
43 |
tctctttccatcgtctccaaaaagttcctttccatcaccaacagt |
87 |
Q |
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||||| ||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
15091356 |
tctctctccctcgtctccaaacagttcctctccatcaccaacagt |
15091400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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