View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_50 (Length: 334)

Name: NF6021_low_50
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_50
NF6021_low_50
[»] scaffold0003 (1 HSPs)
scaffold0003 (23-329)||(8966-9268)
[»] chr7 (1 HSPs)
chr7 (23-329)||(16420254-16420556)
[»] chr8 (1 HSPs)
chr8 (23-329)||(5538209-5538515)
[»] chr3 (1 HSPs)
chr3 (136-293)||(19932296-19932453)
[»] chr1 (5 HSPs)
chr1 (136-293)||(18901508-18901672)
chr1 (136-207)||(51784714-51784783)
chr1 (254-293)||(51784794-51784833)
chr1 (280-322)||(18901445-18901487)
chr1 (289-322)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (136-278)||(37940370-37940512)
chr5 (280-322)||(37940550-37940592)
[»] chr6 (2 HSPs)
chr6 (25-101)||(3508678-3508754)
chr6 (47-86)||(34518720-34518759)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-86)||(188988-189055)
[»] chr2 (2 HSPs)
chr2 (34-71)||(2038088-2038125)
chr2 (24-56)||(29963974-29964006)


Alignment Details
Target: scaffold0003 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 9268 - 8966
Alignment:
Q  23 tccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggtta 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  9268 tccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaagaataggaaccggtta 9171  T
Q  123 ctaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcact 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  9170 ctaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatcact 9071  T
Q  223 tcctttgctctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaatactagctagtaatatctagtagcacatatt 322  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9070 tcctttgctctatgcttccttttgttttcctactttcttgctaatcttatt--atattactctaataaatactagctagtaatatctagtggcacatatt 8973  T
Q  323 cttcgac 329  Q
     ||||||    
T  8972 tttcgac 8966  T

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Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 16420556 - 16420254
Alignment:
Q  23 tccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggtta 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  16420556 tccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaagaataggaaccggtta 16420459  T
Q  123 ctaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcact 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  16420458 ctaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatcact 16420359  T
Q  223 tcctttgctctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaatactagctagtaatatctagtagcacatatt 322  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  16420358 tcctttgctctatgcttccttttgttttcctactttcttgctaatcttatt--atattactctaataaatactagctagtaatatctagtggcacatatt 16420261  T
Q  323 cttcgac 329  Q
     ||||||    
T  16420260 tttcgac 16420254  T

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Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 5538209 - 5538515
Alignment:
Q  23 tccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaagnnnnnnnnnggaaccggtta 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| |||||    
T  5538209 tccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa--aaggaataggaactggtta 5538306  T
Q  123 ctaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcact 222  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  5538307 ctaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg-caatcact 5538405  T
Q  223 tcc-tttgctctatgcttccttttgttttcttactttcttgctaatcttat--tatatattactctaataaatactagctagtaatatctagtagcacat 319  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||    
T  5538406 tccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatactagctagtaatatctaatggcacat 5538505  T
Q  320 attcttcgac 329  Q
    ||| ||||||    
T  5538506 atttttcgac 5538515  T

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Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 136 - 293
Target Start/End: Complemental strand, 19932453 - 19932296
Alignment:
Q  136 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgctctat 235  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||| ||||||    
T  19932453 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccactagtcaatcagttccttttctctat 19932354  T
Q  236 gcttccttttgttttcttactttcttgctaatcttattatatattactctaataaata 293  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||    
T  19932353 gcttccttttgctttcctactttattgctaatcttattatatattactttaataaata 19932296  T

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Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 293
Target Start/End: Complemental strand, 18901672 - 18901508
Alignment:
Q  136 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgttta-------tttccacatgccaatcacttccttt 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||  | |||||| |||||||    
T  18901672 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttt 18901573  T
Q  229 gctctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaata 293  Q
     ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||    
T  18901572 tctctatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaata 18901508  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 51784714 - 51784783
Alignment:
Q  136 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttc 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  51784714 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt--atgtttatttc 51784783  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 51784794 - 51784833
Alignment:
Q  254 actttcttgctaatcttattatatattactctaataaata 293  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  51784794 actttcttgctaatcttattatatattactttaataaata 51784833  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
Q  280 tactctaataaatactagctagtaatatctagtagcacatatt 322  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  18901487 tactctaataaatactagctagtaatatctagtgtcacatatt 18901445  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
Q  289 aaatactagctagtaatatctagtagcacatatt 322  Q
    |||||||||||||||||||||||| |||||||||    
T  51784859 aaatactagctagtaatatctagtggcacatatt 51784892  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 37940370 - 37940512
Alignment:
Q  136 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgctctat 235  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |  ||||| |||||||   ||||    
T  37940370 cactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgtggatgtttatttccactagttaatcagttcctttttcctat 37940469  T
Q  236 gcttccttttgttttcttactttcttgctaatcttattatata 278  Q
    ||||| ||||| || | ||||||||||||||||||||||||||    
T  37940470 gcttctttttgcttacctactttcttgctaatcttattatata 37940512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
Q  280 tactctaataaatactagctagtaatatctagtagcacatatt 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  37940550 tactctaataaatactagctagtaatatctagtggcacatatt 37940592  T

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Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 3508754 - 3508678
Alignment:
Q  25 cctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa 101  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508754 cctttcctattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaa 3508678  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 34518720 - 34518759
Alignment:
Q  47 tctcactatgtattttgtttttgttcttcaaagtatagaa 86  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  34518720 tctctctatgtattttgattttgttcttcaaagtatagaa 34518759  T

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Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 188988 - 189055
Alignment:
Q  24 ccctttcccgttctctttctctttctcactatgtattttgttttt-----gttcttcaaagtatagaa 86  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||     ||||||||||||||||||    
T  188988 ccctttcccgttccctttctctttctccctatgtattttgtttttgttttgttcttcaaagtatagaa 189055  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 2038125 - 2038088
Alignment:
Q  34 ttctctttctctttctcactatgtattttgtttttgtt 71  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2038125 ttctctttctctttcttcctatgtattttgtttttgtt 2038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 29963974 - 29964006
Alignment:
Q  24 ccctttcccgttctctttctctttctcactatg 56  Q
    ||||||||||||||||||||||||||| |||||    
T  29963974 ccctttcccgttctctttctctttctccctatg 29964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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