View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_53 (Length: 323)
Name: NF6021_low_53
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_53 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 94 - 323
Target Start/End: Original strand, 3394327 - 3394556
Alignment:
| Q |
94 |
ataagcttacactattttgttagttaaatttgtttaatgggggtattagcaattcaaatccgttgaaaatgcattttcccatcaaattttggggggaaat |
193 |
Q |
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| T |
3394327 |
ataagcttacactattttgttagttaaatttgtttaatgggggtattagcaattcaaatccgttgaaaatgcattttcccatcaaattttggggggaaat |
3394426 |
T |
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| Q |
194 |
taacgggttccttccccgaggtccaaatttaatgggaagttgtatcatcatctatttgagaaatactaaccaccgtcgtaagagcgtttgttaataagct |
293 |
Q |
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| T |
3394427 |
taacgggttccttccccgaggtcccaatttagtgggaagttgtatcaccatctatttgagaaatactaaccagcgtcgtaagagcatttgttaacaagct |
3394526 |
T |
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| Q |
294 |
cnnnnnnngaaagtttatcataagaataat |
323 |
Q |
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| T |
3394527 |
caacaaaagaaagtttatcataagaataat |
3394556 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 3394283 - 3394340
Alignment:
| Q |
17 |
acacacatgaccgtacctttctttttggaagtatatgtgtgtccataagcttacacta |
74 |
Q |
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| T |
3394283 |
acacacatgaccgtacctttctttttggaagtatatgtgtgtccataagcttacacta |
3394340 |
T |
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