View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_54 (Length: 319)

Name: NF6021_low_54
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_54
NF6021_low_54
[»] chr3 (3 HSPs)
chr3 (22-308)||(53475374-53475660)
chr3 (1-31)||(51284077-51284107)
chr3 (1-30)||(26806108-26806137)
[»] chr7 (2 HSPs)
chr7 (1-31)||(33858881-33858911)
chr7 (1-33)||(34979092-34979124)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-33)||(47630-47662)
[»] chr8 (1 HSPs)
chr8 (1-29)||(2944007-2944035)
[»] chr5 (1 HSPs)
chr5 (1-29)||(41383906-41383934)
[»] chr2 (1 HSPs)
chr2 (1-29)||(5664632-5664660)
[»] chr1 (1 HSPs)
chr1 (1-29)||(30289596-30289624)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 53475374 - 53475660
Alignment:
Q  22 tattatttatttgtcagcttcaaattaacttatatacatatcatatatacttgcatcatatgcattttttcctctcttaagaatattactcatgaacaca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53475374 tattatttatttgtcagcttcaaattaacttatatacatatcatatatacttgcatcatatgcattttttcctctcttaagaatattactcatgaacaca 53475473  T
Q  122 gttgaacattggaccctttttacttgtaactcaatgtcgattttttaatacttagatgactaatttgataatttttattatttaagagaatacttaattt 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53475474 gttgaacattggtccctttttacttgtaactcaatgtcgattttttaatacttagatgactaatttgataatttttattatttaagagaatacttaattt 53475573  T
Q  222 gattaaacaaagttcaatggtgttgatgnnnnnnnnnnnnattcaagtaggatagtgactaaaatttcactctaaaagtaataagtg 308  Q
    ||||||||||||||||||||||||||||            ||||||||||||||||||||| |||||||||||||||||||||||||    
T  53475574 gattaaacaaagttcaatggtgttgatgtttttattttttattcaagtaggatagtgactagaatttcactctaaaagtaataagtg 53475660  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 51284077 - 51284107
Alignment:
Q  1 tataattagggacggagggagtattatttat 31  Q
    |||||||||||||||||||||||||||||||    
T  51284077 tataattagggacggagggagtattatttat 51284107  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 26806137 - 26806108
Alignment:
Q  1 tataattagggacggagggagtattattta 30  Q
    ||||||||||||||||||||||||||||||    
T  26806137 tataattagggacggagggagtattattta 26806108  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33858881 - 33858911
Alignment:
Q  1 tataattagggacggagggagtattatttat 31  Q
    |||||||||||||||||||||||||||||||    
T  33858881 tataattagggacggagggagtattatttat 33858911  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34979092 - 34979124
Alignment:
Q  1 tataattagggacggagggagtattatttattt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  34979092 tataattagggacggagggagtataatttattt 34979124  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47662 - 47630
Alignment:
Q  1 tataattagggacggagggagtattatttattt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  47662 tataattagggacggagggagtataatttattt 47630  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2944035 - 2944007
Alignment:
Q  1 tataattagggacggagggagtattattt 29  Q
    |||||||||||||||||||||||||||||    
T  2944035 tataattagggacggagggagtattattt 2944007  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41383934 - 41383906
Alignment:
Q  1 tataattagggacggagggagtattattt 29  Q
    |||||||||||||||||||||||||||||    
T  41383934 tataattagggacggagggagtattattt 41383906  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5664660 - 5664632
Alignment:
Q  1 tataattagggacggagggagtattattt 29  Q
    |||||||||||||||||||||||||||||    
T  5664660 tataattagggacggagggagtattattt 5664632  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30289624 - 30289596
Alignment:
Q  1 tataattagggacggagggagtattattt 29  Q
    |||||||||||||||||||||||||||||    
T  30289624 tataattagggacggagggagtattattt 30289596  T

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